Protein

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Genbank accession
WBF82004.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MALNFTTITENNVIKDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKIKLTDDKGLTKSYGKITALRDIKEPGYYYISARTLATLSDKPNMESLDVVLHVVPVDTSSKVVQHLYTLSTNNNQIKMLYRFVSGNSSSEWQFIQGLPSNKNAVISGTNILGITSPGVYFVRGMTGGMSSGVDSGFLNLSVDANDNRLAKLTDAETGKEYTSIKKPTGTYTEWKKEFEPKDMEKYLISSVRDDGSSTFPLLVYTSDNKTFQQAIIDHISRTGQTTFTFYVQGGVSGSPMTASCRGLFISDTSNTSSLHGVYTAIGTDGRNVTGSVTSSNWNSPKTAPSHKELWTGAQSFTSIGTTKNLSDDISNYSYVEVYTKHKTAEKTKGNDDTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGVSFKGSTWTLVDSAVQNSKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50386,67170 Da
isoelectric point:7,04919
aromaticity:0,09607
hydropathy:-0,42751

Domains

Domains [InterPro]
DC_1773
STR
12–246
DC_1773 IPR057110
DC_0448
STR
195–457
DC_0448
WBF82004.1
1 458
Architecture
STR
STR 12-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBF82004.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 321 321 0,4362
Central domain 322 447 127 0,0108
C-terminal 448 458 10 0,9956
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-321
Central
322-447
C-terminal
448-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus virus vB_SurM-PSU6
[NCBI] 		3003797 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus ureilyticus
[NCBI] 		94138 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBF82004.1 [NCBI]
Genbank nucleotide accession
OP913464.1 [NCBI]
CDS location
range 89763 -> 91139
strand +
CDS
ATGGCATTAAATTTTACTACAATAACTGAAAACAATGTTATTAAAGACCTTACCACTCAGGTCAATAACATTGGAGAAGAACTAACAAAAGAAAGAAATATATTTGACATTACGGATGATTTAGTTTATAATTTTAATAAATCACAGAAAATTAAACTAACTGATGATAAAGGGTTAACTAAATCTTATGGAAAAATAACAGCCCTTAGAGATATAAAAGAACCTGGTTATTATTATATAAGTGCTAGAACATTAGCAACATTATCAGATAAACCTAATATGGAATCTCTTGATGTTGTTTTACATGTAGTACCTGTTGATACCTCTAGTAAGGTAGTTCAACATTTATATACGCTATCTACTAACAATAACCAAATTAAAATGTTATATAGATTTGTCTCAGGAAACTCTAGTTCAGAATGGCAATTTATTCAAGGATTACCTAGTAATAAAAATGCTGTTATATCCGGGACTAATATTCTAGGTATAACTTCACCAGGTGTTTACTTCGTTAGGGGAATGACAGGTGGAATGTCTAGTGGTGTCGATTCAGGGTTTTTAAATTTAAGTGTAGATGCTAATGATAATAGATTAGCTAAATTAACTGATGCTGAGACTGGTAAAGAATATACTAGCATTAAGAAACCTACAGGGACATATACAGAATGGAAAAAAGAATTTGAGCCAAAAGATATGGAGAAATATTTAATAAGTAGTGTCAGAGACGATGGTAGTTCAACATTCCCACTTTTAGTTTATACTAGTGATAATAAAACGTTTCAACAAGCTATTATAGACCATATAAGTAGAACAGGTCAAACAACCTTTACTTTCTATGTTCAAGGTGGTGTATCAGGCTCTCCTATGACTGCCAGTTGTCGAGGGTTATTTATATCAGATACATCTAACACTTCTAGTTTACATGGTGTTTATACTGCTATAGGTACCGATGGTAGAAATGTAACAGGCTCAGTGACAAGTAGTAATTGGAATTCACCAAAGACAGCACCTTCCCATAAAGAATTATGGACTGGGGCACAATCATTCACATCTATAGGAACCACTAAAAACTTATCAGATGATATCAGTAATTACTCTTATGTAGAGGTTTATACTAAACATAAGACAGCAGAGAAGACTAAAGGTAATGACGATACAGGAACTATATGCCATAAGTTTTATTTAGATGGTAGTGGAACTTACGTTTGTTCAGGTACATTTGTTTCCGGGGATAGAACTGATACAAAACCACCTATCACAGAGTTTTATAGAGTAGGTGTATCTTTTAAAGGTTCTACATGGACGCTTGTAGATAGTGCAGTACAAAATAGTAAAACTCAATACGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c992f777b7bcd9e84fb08b4a0b91a2ccab0308f65a2cd1b836988f3393ed6c87
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8004
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus virus vB_SurM-PSU6 Kwon,H., Park,S.Y. and Kim,J.H. 2016-07-06 — GenBank