Protein

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Genbank accession
AFJ96074.1 [GenBank]
Protein name
gp16
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MQYLEPPRKVYINRDDPIEIKAVEHDIKSRFIDFKFLGEINIIDLTYSTVRISGINPKHFSIFDELTIVDGKKGIARLELTDDFLIPGTADYQLTIRDSNGGRLTPLCLVRLIISKSLVDTEAIQSSNNFSALDKALTKVENFNDVDVRSKENQANIKKNVKSIEDLKNNLNTTTERMQDNTETIIYNLKNKEGSYGDCIVIKSDDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVGNAPKIIEKYRPDFIVFKDGIDYSRLPATEQEWDTKGYHDRMLAAADKFNVQKIVANDQQFKIGKNDYIEAFASKFYDYSNENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDLYKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKNFALKCLKYGGKVYSNDNNDMTVFKITRGAIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGFIATNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNTYLIKSNTLMAEEEFYEYQANYYYASKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIEGKWYDFNGSGVCTNPSAGRDTKAK
Physico‐chemical
properties
protein length:633 AA
molecular weight: 72927,43670 Da
isoelectric point:5,82096
aromaticity:0,12638
hydropathy:-0,55087

Domains

Domains [InterPro]
Coil
Unmapped
164–184
Coil IPR036866 SSF69360
IPR036866
STR
190–439
IPR036866 G3DSA:2.10.270.10 G3DSA:2.10.270.10
IPR036866
STR
194–396
IPR036866
IPR001279
STR
196–285
IPR001279
IPR052159
Unmapped
197–396
IPR052159
AFJ96074.1
1 633
Architecture
STR
ATT
STR 185-439 | ATT 450-630 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFJ96074.1
1 633
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,7901
Central domain 249 622 375 0,7442
C-terminal 623 633 10 0,3742
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-622
C-terminal
623-633

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage PhiS63
[NCBI] 		1187894 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens strain S63
[NCBI] 		164114 Actinomycetota > Actinomycetes > Kitasatosporales > Streptomycetaceae > Streptomyces >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFJ96074.1 [NCBI]
Genbank nucleotide accession
JQ660954 [NCBI]
CDS location
range 15267 -> 17168
strand +
CDS
ATGCAATATTTAGAACCACCTAGAAAAGTTTATATAAATCGAGATGATCCAATAGAAATTAAAGCGGTTGAGCATGATATTAAATCAAGGTTTATAGATTTTAAGTTTCTAGGTGAAATTAATATTATAGATTTAACATATAGTACAGTTAGAATTTCTGGTATAAACCCCAAACATTTTTCTATTTTTGATGAGTTAACTATAGTTGATGGTAAAAAAGGAATTGCAAGATTAGAATTAACAGATGATTTTTTAATTCCAGGAACAGCAGATTATCAACTAACAATCCGTGATTCTAATGGTGGCCGTCTTACTCCACTTTGCTTAGTTAGATTAATTATTTCTAAAAGTTTAGTAGATACTGAAGCTATACAAAGTTCTAATAACTTTTCTGCTTTAGATAAAGCTCTTACAAAAGTAGAAAATTTTAATGATGTAGATGTAAGAAGTAAAGAAAATCAAGCTAACATTAAGAAAAATGTAAAAAGCATTGAGGATTTAAAAAATAATTTAAATACTACAACAGAAAGAATGCAAGACAATACTGAAACTATTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGGGGATTGTATAGTAATAAAAAGCGACGATGGAACTTTTAGTATGATTGATTGCTTTATGGAAGAAAATTATCAAGTTCAAATTCAACAACTAGATAAAATTGGATTAACAAAGTTGAAATATCTTTTTATAACTCATGATCACTCTGACCATGTTGGAAACGCTCCTAAAATTATAGAAAAATATAGACCTGATTTTATAGTTTTTAAAGATGGAATAGATTATTCTAGGCTACCAGCTACAGAGCAAGAATGGGACACTAAAGGATATCACGATAGAATGTTAGCAGCAGCTGATAAATTCAATGTGCAAAAGATAGTTGCTAATGACCAACAATTTAAAATAGGAAAAAATGATTATATAGAAGCTTTCGCATCTAAATTCTATGATTATAGCAATGAAAATAATATGAGTGTTAATTATCTTCTAGTATCTCATGGAACTAAATCATTGTTTCCTGGTGATAGTACAGTAGCTACTGAAACACATTTACAAAACAGAATAGGTAAAATTGATTTATACAAATTAAGTCATCATGGGGCTGACGGTGGAAATAGTGATAAAAGATTTGAAGAATTACAAGCTAGGTATTGCTTAATAGATAGATTAGATGTTTATAAGAAAGATATTATAAAAAACTTTGCTTTAAAGTGCTTGAAGTATGGGGGTAAAGTCTACAGTAATGATAACAACGATATGACAGTATTTAAGATAACTCGAGGAGCTATTTATCCATGTTGTCATGAGTATAAATTACCACTTCAATTCCTGGATTACTATAGTGGTAAATATAAAATGACTAATGAAGCTGGGGGAATTGCAACTAAAGGAATATATCCTTATAAATCAGACTTCTACTTTGTAAAGGATGATGGATTTATAGCAACAAATGAATGGATAAAACATGATGGAATTGATTATCATGCAAGTTCTTCAGGTGCTTTAGATAGAAATTGCTTTATTCAAGGAACTTTTAACGAAAAGCCATGCTATTATTGGATAGATGAAAATTGCAAAATGGTTATAGAGCCTAAACTTATTTATTATAACAATAATACTTATTTAATTAAGTCTAATACATTAATGGCAGAAGAAGAGTTTTATGAATACCAGGCTAACTATTATTATGCTAGTAAAGGTGGAGCATTAAAGAAGAATGAATGGCTTTATAAAGATTCTAACTACTATTGGCTAAAATTTAATGGGGTAATGGCTAGTGAGGAAACCTTGTTTATTGAAGGTAAATGGTATGACTTTAATGGAAGTGGAGTATGTACTAATCCAAGTGCAGGAAGAGATACAAAAGCAAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
6a09d9ec216853fa7699ebe837871ac3621977a765a8227944f4b0b04a44af2f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Clostridium perfringens bacteriophages PhiS9 and PhiS63: different genome structures and attB insertion sites Loessner,M.J., Zimmer,M., Lurz,R., Klumpp,J., Born,Y. and Kim,K.-P. 2012-04 — GenBank