Protein

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Genbank accession
YP_009883288.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTRNVEELFGGVVTAPHQIPFTYKSNVGGETFLSLPFYPVTGVITINGGMQVPLDNFEIEGNTLNLGRALSKGDVVYCLFDKILSPEDTAKGIRIYKFQAVGGETEFTPDFTSYGVQSLYIGGEYKTPEIEYSYSSTTGKVSLQTALTAGVWVVAEMSVKQPNISPAFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIAAQTSYGLPTIPDGSVISSVSNGQLTYNPGNITVSLLPAPYPVQTALDQYKALISSKQGTANIGHSSPAASLVERSLQMKLSDIINIKDFGAIGDGLLHPLSEKFNTLSAAQMVYPFVTDLNQSQDYAGTQAAINAAKAGYAVFAPSGKYEINHGLVADYALCMYGEGAQGLRTVDATMHSPSPVRGTVFNSHVATGRMLSIDSGSAYCFGMTLRDFAIWGVDGQCDVGLYINGVGWMGIVKGINIQFFPNQALEIGYIQDTYFTNCSFLQSGSVDKPAVTMIQDSNYVYFTGCHFELTPYMIKCGNPWFLFFNHCHFEVARPVSTGSTPADRFVYTKAPIDLGTSYRVFFCNNVFIPTDVGYLATKLSVSRKDVPYFITGSGSVISFTGDTFLAPEGTIKSAYLSGTDIDFNGVKFIRCDPSDYGLFVQNGKVANCSYGIDVTADTVTLCGIKVPTGSVTNTKFGFYEADSNGQRTAGGLLVGGAHCSGNELPIDARINIYADSGITVNGFDGGKPFFVDVANAGDIDLTKIHPAANLRITGAAVSIFHIYGAPYGRDLIIASNTTDGVIKYAANNIIPKGSVDFAIPQYHHTLWRCINDGSATMYQIS
Physico‐chemical
properties
protein length:815 AA
molecular weight: 87640,00630 Da
isoelectric point:5,18931
aromaticity:0,11043
hydropathy:0,04258

Domains

Domains [InterPro]
DC_0063
STR
1–811
DC_0063
G3DSA:3.30.2020.50
ATT
156–245
G3DSA:3.30.2020.50 IPR012334
IPR011050
STR
331–662
IPR011050
YP_009883288.1
1 815
Architecture
STR
ATT
STR
STR 1-155 | ATT 156-245 | STR 246-811 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009883288.1
1 815
Domain Start End Length (AA) Confidence
N-terminal 1 329 329 0,9944
Central domain 330 722 394 0,9958
C-terminal 723 815 92 0,9773
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-329
Central
330-722
C-terminal
723-815

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SS9
[NCBI] 		2592220 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009883288.1 [NCBI]
Genbank nucleotide accession
NC_049458.1 [NCBI]
CDS location
range 153857 -> 156304
strand -
CDS
ATGACCAGAAATGTAGAAGAATTATTCGGCGGCGTAGTCACAGCTCCCCACCAGATTCCTTTCACGTATAAATCAAATGTCGGTGGAGAAACTTTCCTTTCCTTGCCGTTCTATCCTGTCACTGGTGTTATCACAATCAACGGCGGTATGCAAGTTCCGTTAGACAACTTTGAAATCGAAGGAAATACGTTGAATCTCGGGCGCGCATTGTCCAAAGGTGATGTTGTGTATTGCTTATTCGATAAAATTCTTTCGCCAGAAGATACAGCCAAAGGTATCCGCATATACAAATTTCAGGCCGTAGGCGGTGAAACTGAGTTCACTCCTGATTTCACATCTTATGGAGTCCAATCTCTTTATATCGGTGGCGAGTACAAAACACCCGAAATTGAATATTCCTATAGCAGCACGACAGGGAAAGTGTCTTTGCAAACTGCACTGACTGCAGGCGTTTGGGTAGTCGCTGAAATGTCTGTTAAACAACCGAATATCAGTCCGGCGTTTGACCGAAGTATTCAAGAAATCGCCCGTTCTGCTAATGTTAAAGACTCTGAAGTCATCGTTAGTACGGACACCATATCTTTATTGGATGGGAAGAAAGTTGTTTATGACATAGCGGCACAAACCAGTTATGGTTTACCAACAATTCCTGACGGTTCTGTCATTTCTTCTGTAAGCAATGGGCAACTTACTTATAATCCAGGAAACATTACTGTTAGTTTACTTCCTGCTCCATATCCAGTGCAAACTGCACTTGACCAATATAAGGCTCTGATTAGTTCTAAACAGGGTACAGCAAACATTGGGCATTCATCTCCAGCAGCTTCTCTTGTTGAACGTAGTCTTCAAATGAAGTTGTCAGATATAATCAACATTAAAGACTTTGGTGCAATTGGGGATGGATTACTACACCCTCTGAGTGAAAAGTTTAATACGCTGTCTGCTGCTCAAATGGTTTACCCTTTTGTTACTGATTTGAACCAAAGTCAGGACTATGCTGGTACACAAGCAGCAATCAATGCAGCTAAAGCTGGTTATGCTGTATTTGCTCCATCTGGTAAGTATGAGATTAACCATGGACTAGTGGCAGACTATGCTCTTTGCATGTATGGGGAAGGTGCTCAGGGTCTTCGTACTGTAGATGCTACTATGCACTCACCTTCACCTGTGCGTGGTACTGTATTTAACTCGCATGTTGCTACTGGTCGTATGTTATCTATAGACTCCGGTAGTGCTTATTGCTTTGGTATGACTTTACGTGACTTTGCTATCTGGGGTGTAGATGGTCAATGTGATGTTGGTCTATACATCAATGGCGTAGGCTGGATGGGTATAGTTAAAGGTATTAATATTCAGTTCTTCCCGAATCAAGCATTGGAGATTGGGTACATTCAAGATACATACTTTACCAACTGCTCATTCTTGCAGAGTGGTAGTGTTGATAAACCTGCTGTGACTATGATTCAAGACAGTAACTATGTGTATTTTACCGGATGCCACTTCGAACTTACTCCATACATGATTAAGTGTGGTAACCCGTGGTTCTTGTTCTTTAATCATTGTCACTTTGAAGTAGCTCGGCCAGTTAGTACGGGTTCTACTCCTGCTGACCGTTTTGTTTATACTAAGGCTCCTATTGACCTGGGTACTAGTTATAGGGTCTTTTTCTGCAATAACGTATTTATCCCAACAGATGTTGGATACCTTGCTACTAAGCTGTCTGTATCACGCAAAGATGTACCATATTTCATTACTGGTTCCGGGAGTGTAATTAGCTTTACCGGGGATACCTTCCTGGCTCCAGAAGGTACTATCAAATCGGCATATCTGTCAGGTACAGATATTGACTTTAATGGGGTTAAGTTTATTAGATGTGACCCATCAGATTACGGGTTATTCGTCCAGAACGGTAAGGTTGCTAACTGTAGTTATGGTATAGATGTCACTGCCGATACGGTAACTTTGTGTGGTATTAAAGTACCTACAGGTAGTGTGACCAATACCAAGTTTGGCTTCTATGAAGCAGACTCTAATGGTCAACGTACTGCTGGTGGTCTACTTGTGGGTGGTGCACATTGTTCTGGTAATGAGTTGCCTATTGATGCTCGTATTAATATCTATGCCGATTCGGGCATTACTGTGAATGGGTTTGATGGGGGTAAACCATTCTTTGTTGATGTTGCTAATGCTGGGGATATTGACCTTACTAAAATCCATCCTGCTGCTAACCTACGCATTACTGGTGCTGCTGTTAGTATATTCCATATCTATGGAGCACCTTACGGAAGAGATTTGATAATTGCATCTAATACCACTGATGGTGTTATTAAGTATGCAGCAAATAATATTATTCCCAAAGGTTCTGTGGACTTTGCTATACCACAATATCACCATACCTTATGGCGTTGCATTAATGATGGCTCTGCCACCATGTATCAAATTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5783386a8c2399b0beaa781a2fdf279436c812badb641f6988a425f738bcf5c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7212
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 2019-09-14 — GenBank