Protein

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Genbank accession
YP_008125618.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARTVPGSGAVIEPIFDEVFGVRAVKVTNGGSGYDPADPPRLTITGCGTPEREALLYPIVDANSGRIIHVRVLDRGKGYDPLRLQIVPTSETPNVINSFNINRIWQSHPNSTTAGTFSGVTDRLSIVSDNHPKPSQYILAERQPGGSDDILDRTFDQTFIYRGGKDVPNPSTRPEQNDKVTGIFSNGTLLHTPEWGTDGNTPVGFSIDSVKYDYVKSANVYDAVTEAGIYYHQSKNAINEFSLANGVFDWGGLKQFTWNVKVEYGNILISVTNVDETLGSVEIGRLIDEIGGNASGEIAKIVRNNQNQITRLYLRNVTNTFADGDVLLGSNGFNVTISDDPISLNLYYIEFGQYAEKFGAFVPGQYYLAPENIQVKRNYLIIFNQTDSSNQLGAGHPLRMSTTTDGTLNGGSLYYNSTGSSAAPSTDYENEYQSIFVMNADESNRIYYHCAYHRYMSGYEGDEGYMILSSNTENEEIVNNYYAENYYQSDENDLNTIDKSRHVDGHSKILGMSFDGYPIYGPYGYTTNRTVGRMVSSYRLRTTNELSGGREEVVTASTITYAVTVSAGKYLFDASSVEFLELLRGKTYIFNQDDSTNDNNAILISSTDDGWHGADPSIIGDVANLYSGQGISYYLDGSEVTYTNYISGFAAASQREIRFEVPVDAPRLLYVFGYSTADLGIRIVQQGYKLGDLTQDYIYDTSVSGATLDEYNGKFGVTPEYPNGTYAYFMAETSSGEPQYPYVIGPKYYGVPLFEGDVVPNISSNFPTETAGDVVLNTDGTVSYIKMTRTGDNYFGSAKSYILGGQGTGAVGTPTVQTVTGLSLLNEGRSYATPPTLIFEGGGGGGAQGAAEIDTLGKLSTVSVVDPGEFYQEPPYILVTGGGGIGAKATAVISQGEITAINVTDPGEGYTSPPNIIFTKLVNLKRKTRSRQAFNSTTNYITGLLKDVEPDDIEIFVQSTDAFPGSGELILNDETISYTGRSRNRFTGLSRGVNFNYDQRVILDPGQNDQTGSSLYKFNVNDRVIRRIENENNKIAKVYDWDPATRELLVTFEVDELAFIDAGIASTEDAIVQFDAGVANTTGSAALPHIIEVEDGETIVTLTVPIATLQDRKLQDNIGGLDADGNVIGDGIPDLFNAGTAFENQISLDGGIYSSLYGIEETQGGQNTTLFQVGDNIKDASIPQLFATVVEAGGLSEGVDHTALVYLQLDPNSSNGQNFSLNEVVTGSVSGITGTVVAWDSATSLLTLSSITPYNTGNVNVGVAGLLYEYSYNSTIVDFIIQDAGTNYSAVPTISIENTGDIQATGTAVMTTANDQISSVTINNGGYGIAQTIDGTYNLHPIITVTNAVGDTTGSGAVIQAILGGENAVGNAGASYRIKGVSYSSSIRS
Physico‐chemical
properties
protein length:1389 AA
molecular weight: 149724,08630 Da
isoelectric point:4,41624
aromaticity:0,09863
hydropathy:-0,25788

Domains

Domains [InterPro]
DC_1338
ATT
1–844
DC_1338 DC_0155
IPR025924
STR
499–546
IPR025924 DC_0155
IPR025924
STR
688–733
IPR025924
YP_008125618.1
1 1389
Architecture
ATT
STR
STR
ATT 1-844 | STR 845-1271 | STR 1327-1389
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008125618.1
1 1389
Domain Start End Length (AA) Confidence
N-terminal 1 121 121 0,9745
Central domain 122 1378 1258 0,2848
C-terminal 1379 1389 10 0,0549
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-121
Central
122-1378
C-terminal
1379-1389

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM8
[NCBI] 		754038 Uroviricota > Caudoviricetes > Pantevenvirales > Neritesvirus > Neritesvirus scam8
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008125618.1 [NCBI]
Genbank nucleotide accession
NC_021530 [NCBI]
CDS location
range 74592 -> 78761
strand +
CDS
ATGGCAAGAACTGTTCCTGGATCTGGTGCCGTCATCGAGCCCATCTTCGATGAGGTTTTCGGTGTTCGTGCAGTAAAAGTTACGAATGGTGGAAGTGGGTATGATCCTGCAGATCCACCACGTTTAACTATCACTGGTTGTGGCACGCCAGAACGAGAAGCATTATTGTATCCAATTGTTGATGCTAATTCTGGAAGAATTATACACGTTAGAGTTCTTGATAGGGGAAAGGGGTACGATCCATTAAGACTTCAAATTGTTCCTACATCGGAAACTCCTAACGTTATTAATTCTTTTAATATCAATAGAATTTGGCAAAGTCATCCAAATTCTACAACTGCAGGAACTTTTAGTGGCGTTACAGATCGACTTAGTATTGTATCTGATAATCATCCTAAACCATCTCAATATATCTTAGCAGAGAGGCAACCAGGTGGTTCTGATGATATTCTAGATAGAACATTCGATCAGACTTTCATTTATAGAGGAGGGAAAGATGTACCCAATCCCTCAACAAGACCAGAACAGAATGATAAAGTAACAGGAATTTTTTCAAACGGCACCTTACTTCATACCCCAGAGTGGGGAACTGATGGGAATACACCTGTTGGATTTTCTATTGATAGTGTAAAATATGATTACGTAAAAAGTGCAAATGTATATGACGCTGTAACTGAAGCGGGAATATATTATCATCAATCAAAAAATGCCATCAATGAGTTTTCTCTGGCGAATGGGGTTTTTGATTGGGGTGGACTAAAACAATTTACATGGAATGTAAAGGTAGAATATGGTAATATTTTAATTTCTGTTACTAATGTTGATGAGACACTGGGTAGTGTTGAGATTGGTAGACTGATTGATGAAATTGGTGGCAATGCTTCTGGAGAGATTGCTAAAATTGTAAGAAATAATCAAAACCAAATTACAAGACTTTATCTCAGAAATGTAACTAATACATTTGCTGATGGAGACGTTTTACTAGGATCTAATGGATTTAATGTAACTATCTCAGATGATCCTATAAGTTTAAATTTATATTATATTGAGTTTGGGCAATACGCTGAAAAATTTGGAGCATTTGTTCCTGGTCAATATTATCTGGCACCTGAAAATATACAGGTTAAAAGAAATTATTTAATTATTTTCAATCAGACAGATTCGTCTAATCAGCTGGGTGCGGGACATCCATTACGTATGAGTACCACAACTGATGGTACTCTTAATGGAGGATCTCTTTATTACAACAGTACAGGGTCTTCAGCAGCACCATCTACTGATTATGAAAATGAATATCAATCGATATTTGTGATGAATGCTGATGAGAGTAATAGAATTTATTATCATTGTGCTTATCACAGATATATGTCTGGATATGAAGGTGATGAAGGATATATGATCCTTAGTAGCAATACTGAAAATGAAGAGATAGTTAATAATTATTATGCTGAGAATTATTATCAGTCTGATGAAAATGATCTAAATACGATCGATAAGTCTAGACATGTAGATGGACACTCTAAGATTTTGGGTATGTCTTTTGATGGATATCCAATTTATGGTCCATATGGATATACTACAAATAGAACTGTCGGTAGAATGGTTAGTTCTTACAGATTAAGAACTACTAATGAATTATCTGGTGGTAGGGAAGAAGTTGTTACTGCTTCGACAATAACTTATGCAGTCACTGTTTCTGCAGGAAAATACTTATTCGATGCTTCGTCTGTAGAATTTTTAGAATTATTAAGAGGAAAGACTTATATCTTTAATCAAGATGATTCTACTAATGATAATAATGCAATCCTAATTTCTTCGACTGATGATGGTTGGCATGGTGCAGATCCTTCAATTATTGGGGATGTAGCAAATCTATATTCTGGTCAAGGTATTTCATATTATCTGGATGGTTCTGAAGTAACCTATACTAATTATATTTCTGGATTTGCTGCTGCATCTCAGAGAGAAATTCGCTTTGAAGTTCCTGTTGATGCACCTAGATTGCTGTATGTATTTGGTTATTCTACTGCAGATTTAGGAATTAGAATTGTCCAGCAGGGTTATAAACTTGGTGATCTTACACAAGACTATATCTATGACACTAGTGTTTCTGGAGCAACTCTGGATGAATATAATGGTAAGTTTGGTGTAACACCAGAATATCCAAATGGCACATATGCATATTTTATGGCAGAAACGTCATCGGGAGAACCTCAATATCCATATGTAATTGGACCAAAATATTATGGCGTTCCTTTATTTGAAGGTGATGTAGTCCCAAATATTTCTAGCAATTTTCCAACTGAAACTGCAGGTGATGTTGTCCTCAATACTGATGGAACCGTATCATATATTAAGATGACCAGAACTGGAGATAATTATTTTGGTTCTGCAAAGTCATATATTTTAGGTGGTCAGGGTACAGGTGCTGTAGGAACACCTACTGTACAAACTGTGACTGGTCTGTCTTTATTGAATGAGGGTCGTAGTTATGCAACTCCACCTACACTTATCTTTGAAGGTGGTGGCGGTGGCGGTGCTCAAGGTGCTGCAGAGATTGATACTTTAGGTAAACTTTCTACTGTATCTGTTGTTGATCCTGGAGAATTTTATCAGGAACCTCCTTATATTCTTGTTACTGGTGGCGGCGGCATCGGTGCAAAAGCTACTGCCGTGATTAGTCAAGGTGAAATTACTGCTATTAATGTAACAGATCCTGGAGAAGGATATACCTCTCCACCAAATATTATCTTCACTAAGTTAGTAAACTTAAAGAGGAAAACTAGATCTAGACAAGCATTCAACTCCACTACAAATTACATTACAGGTTTGCTTAAAGATGTAGAACCCGATGATATTGAGATTTTTGTTCAATCTACAGATGCATTCCCTGGATCTGGCGAACTTATACTTAATGATGAAACTATTTCATATACTGGAAGATCTAGAAATAGATTTACTGGATTATCCAGAGGTGTTAATTTCAACTATGATCAACGTGTAATCTTGGATCCTGGTCAAAATGATCAAACAGGATCTTCCTTATATAAATTCAATGTTAACGATCGAGTAATTCGTAGAATTGAGAATGAAAATAATAAGATTGCTAAAGTATATGACTGGGATCCTGCAACCAGAGAACTTTTAGTTACATTTGAAGTTGATGAACTGGCATTCATTGATGCAGGAATTGCTTCTACTGAAGATGCAATCGTTCAGTTTGATGCTGGAGTTGCAAATACTACAGGATCGGCAGCATTACCTCACATTATCGAAGTTGAAGATGGAGAAACTATTGTTACATTAACTGTTCCAATTGCCACTTTACAAGATAGAAAACTACAAGATAATATTGGTGGTTTAGATGCTGATGGCAATGTTATTGGAGATGGTATTCCAGATTTGTTTAATGCAGGAACCGCATTTGAAAATCAAATTAGTTTAGATGGTGGTATATACAGTTCTTTGTATGGTATTGAAGAAACTCAAGGTGGACAAAATACCACACTTTTCCAAGTTGGTGATAACATTAAAGATGCAAGTATTCCTCAACTATTTGCTACAGTTGTTGAAGCAGGAGGTTTAAGTGAAGGTGTTGATCATACAGCACTTGTATATCTTCAGTTAGATCCCAACTCCTCTAATGGTCAAAACTTTAGTTTGAACGAAGTTGTAACTGGTTCTGTTTCTGGTATTACTGGTACTGTTGTTGCTTGGGATTCTGCTACTTCGTTGCTTACTCTCAGTAGCATTACTCCGTATAATACTGGTAATGTTAACGTTGGTGTTGCTGGATTGCTTTATGAGTACTCATATAACAGCACTATTGTTGATTTTATCATTCAAGATGCTGGTACTAACTACAGTGCTGTTCCTACTATATCAATTGAAAATACAGGAGATATTCAAGCGACTGGAACTGCTGTTATGACTACCGCTAATGATCAAATTAGTTCTGTCACCATTAACAATGGTGGATATGGTATTGCTCAAACAATTGATGGGACATACAACCTCCACCCAATAATTACAGTTACAAATGCGGTAGGAGATACTACGGGTTCTGGTGCGGTTATACAAGCAATCCTTGGTGGAGAAAATGCTGTTGGTAATGCTGGAGCATCTTATAGAATCAAGGGAGTAAGTTACTCTTCTAGTATTCGTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a1aa81c0859c0111e97b7f56d2ff75891e07e6943db448f7f49f7f0941045b1c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4611
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CAM8 0608BI06 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank