Protein

View in Explore
Genbank accession
YP_009610536.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MNILRSFTETVVTTPTDTFPISFEYDEKYDAVHVFLNDVAVEDLGYVVSHINAVTLKIEPAIPSGTVRIERETDIDKMLYIFDAGALFIDQNVDADFRQIVHSQQEVRDGFIKLRGDVLPLVHGLEEALKAVNEAAGAAKDAADAAVEAAEDAADALAKISGAVNSVESIQDMLNLQNPNAGENVFVLSYYTGENRGGGHFTYDPTKVSVNNGVTVFNGWVRDLTSRCLSTYDAGLKGDGTDTDVTSRLRTFAQLTSRNGFTVQIIGTYYPSSSIVFSNAVDLKIVGINSKIEADRANWTFDGTKRGVIYANDCPNIVISNLKGIKGVTLTNYNIPLSEARMQDGDAGIQLVRCDNNIIMHCSVSYVKTWGILAESCKQSTIIYNTITRCLRQSGINAIVNSSGEGTIIAHNNISECGLYAIELETQVASKGKHLVHDNTIYNCQVGISCVGKVFDTLIHDNMITDCAQAFLTVNTNQTATKSERLKIYDNMVLRCASGYRYSGTWYADFYDNTLDGANVPAYGLTSPYHAVEQLINTTSFKSIRNFTVGSTIYINDVAYIVTASSSAADTEFGAGTVYTITVNNPLTGVQNGDAIKTPMTVRKCIDAWYLENRYTNIENNTIRNYPTGYYTQPTMNTGYNNYVSKNRFIDCANAIESPTDTPGISFLNNEYVRCTNNPIHVNQVIRGQTSIKWFNVENPVPITSGGTKWIVNFNVEDDLFYQAVDLYIFNSGTSSGTIVVQLDGVDLTQRNVSASGTVNALNNLTSIQKLVRGAHTLRIIDTTGAFSCAFWRIGFKCV
Physico‐chemical
properties
protein length:799 AA
molecular weight: 87652,27340 Da
isoelectric point:5,07961
aromaticity:0,09262
hydropathy:-0,11890

Domains

Domains [InterPro]
DC_1044
STR
1–512
DC_1044 DC_1440
IPR012334
STR
230–541
IPR012334 IPR006626 IPR006626 IPR006626
IPR011050
STR
231–567
IPR011050
IPR007742
CBM
317–466
IPR007742 IPR006626
IPR006626
Unmapped
377–400
IPR006626 IPR006626 IPR006626 IPR006626
YP_009610536.1
1 799
Architecture
STR
RBD
STR 1-567 | RBD 568-799
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009610536.1
1 799
Domain Start End Length (AA) Confidence
N-terminal 1 245 245 0,9960
Central domain 246 691 447 0,9872
C-terminal 692 799 107 0,9792
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-245
Central
246-691
C-terminal
692-799

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_ApiP_P2
[NCBI] 		2016053 Uroviricota > Caudoviricetes > Autographivirales > Beijerinckvirinae > Friunavirus
Host Acinetobacter pittii
[NCBI] 		48296 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009610536.1 [NCBI]
Genbank nucleotide accession
NC_042007.1 [NCBI]
CDS location
range 35207 -> 37606
strand +
CDS
ATGAACATACTACGATCATTTACAGAGACAGTGGTGACTACACCTACAGATACTTTCCCTATCAGTTTTGAATATGATGAGAAATATGATGCTGTACATGTCTTTCTTAATGACGTAGCAGTTGAAGATTTGGGGTACGTTGTATCCCACATCAACGCTGTTACTTTAAAGATTGAACCTGCCATTCCATCTGGCACTGTACGTATCGAACGTGAGACCGATATTGATAAGATGTTGTACATCTTCGATGCGGGTGCATTGTTTATTGATCAAAACGTGGATGCGGATTTTAGACAAATTGTACACTCACAACAAGAGGTACGAGACGGTTTTATTAAATTACGTGGTGATGTGCTGCCACTAGTACATGGTTTAGAGGAAGCCCTTAAAGCCGTTAACGAAGCTGCTGGTGCTGCTAAAGACGCTGCGGATGCTGCTGTTGAAGCTGCTGAAGATGCTGCCGATGCACTTGCTAAAATCAGTGGTGCTGTTAACTCTGTAGAAAGTATTCAAGACATGCTTAACCTACAGAATCCTAATGCTGGTGAGAATGTGTTCGTATTATCTTATTACACTGGTGAGAATAGGGGTGGTGGTCACTTCACATACGACCCAACCAAGGTGTCTGTAAACAACGGAGTAACTGTATTTAATGGATGGGTTAGAGATTTAACCTCTCGATGCTTGTCTACCTATGACGCAGGTCTAAAGGGGGATGGTACAGATACAGATGTAACTAGCAGATTACGTACTTTTGCACAATTAACATCACGTAACGGTTTTACAGTTCAGATAATTGGAACATATTACCCGTCCTCAAGCATCGTTTTCAGCAATGCTGTAGATTTAAAAATTGTCGGCATTAACTCGAAAATCGAAGCAGATCGCGCAAACTGGACGTTTGACGGTACAAAACGTGGTGTGATCTATGCAAATGACTGCCCAAACATTGTTATTAGTAATTTAAAAGGTATTAAGGGCGTAACACTTACAAATTACAACATCCCGTTGAGCGAAGCGAGAATGCAGGATGGCGATGCTGGAATACAGCTTGTACGTTGTGATAACAATATCATAATGCACTGTAGTGTTAGCTATGTGAAAACATGGGGTATTCTTGCTGAATCATGTAAGCAATCAACGATTATTTATAACACTATCACTAGATGCTTGCGCCAATCGGGTATCAACGCAATCGTCAACTCGTCTGGTGAGGGTACTATCATTGCACACAATAATATCTCTGAATGCGGTTTGTACGCAATTGAGTTAGAAACGCAAGTTGCAAGCAAGGGTAAACATTTAGTACATGACAATACAATTTATAATTGTCAAGTGGGTATTTCTTGTGTCGGAAAAGTATTCGATACATTGATTCACGACAACATGATTACTGATTGCGCGCAGGCATTTTTAACAGTTAATACTAATCAGACAGCAACAAAATCTGAGAGATTAAAAATATACGATAACATGGTATTGCGATGTGCAAGTGGTTATCGTTATAGCGGAACATGGTATGCGGATTTTTATGACAACACGCTTGATGGTGCAAATGTTCCAGCTTATGGCTTAACAAGTCCGTATCACGCAGTTGAGCAACTTATTAACACGACTTCATTTAAATCTATCCGCAATTTTACAGTCGGTTCAACAATTTATATTAATGATGTTGCATACATAGTCACAGCAAGCAGTTCTGCTGCTGATACAGAATTTGGAGCGGGAACAGTTTACACGATTACAGTAAACAACCCTCTCACAGGCGTGCAGAACGGTGATGCTATCAAAACGCCAATGACTGTGCGGAAATGTATTGATGCTTGGTATCTTGAAAATCGCTACACAAATATCGAGAATAATACGATTCGTAACTATCCGACGGGCTACTACACTCAGCCTACCATGAACACTGGCTACAATAACTACGTTTCAAAAAATAGATTCATAGATTGTGCGAATGCGATAGAAAGTCCAACGGATACCCCAGGAATTAGTTTCTTAAACAATGAATATGTACGTTGTACAAACAACCCTATTCACGTCAACCAAGTAATTCGCGGTCAGACGTCAATTAAGTGGTTTAATGTTGAAAACCCCGTACCCATAACTTCTGGCGGTACAAAATGGATAGTCAACTTTAATGTTGAAGATGATTTGTTCTATCAGGCTGTGGATTTGTATATTTTCAACTCAGGAACTTCAAGCGGGACAATTGTTGTTCAGCTAGATGGTGTTGATTTAACACAAAGAAACGTGTCGGCAAGCGGTACAGTCAATGCGTTAAATAACCTAACTAGTATTCAGAAGTTAGTAAGAGGCGCGCATACTTTGCGTATTATTGATACTACTGGCGCATTCTCTTGTGCATTTTGGCGCATTGGATTTAAGTGCGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
df799bdbe274809d988860943fd3d9eabd1b9cead394ad809f4c7308d8b545a8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8125
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sensitivity acquisition of phages to Acinetobacter calcoaceticus-baumannii complex species through exchange of pectate lyase domains Oliveira,H., Rita,A., Konstantinidis,N., Dotsch,A., Ferreira,A., Akturk,E., Nemec,A., Sillankorva,S., Shneider,M. and Azeredo,J. 2021-06 — GenBank