Protein

View in Explore
Genbank accession
YP_009843765.1 [GenBank]
Protein name
EPS depolymerase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSTMNGGAGGILVLPGQNGGTAGNKPTSKPQPPSLQDIISGSEKTVLFALITEFLKLNPDAVSAADPKVIKAAVIEYLDQNPITAGLDAAAVQGLINTSIQAIRQGHTDTEIQNIINTFIATNPPSFNDAVKKYLKDNPVSGGGGLGEDQINDLIELYIAANGYNNDASDINNLIQGWIASHPISATIDPAVLTKAITDYLKANPVVPDSDAVEAAVTAYFNAHPPAAGVSPAQMTKALSDLLASTDFTTAVVASIKAEEANLLAQDAFKNAVNGMITAALTAKDFTADITAAINQYFSTHPQRTDAQVKALVAAWINDNPQGLSQAEVEAAIVAYLTANPPGDVSAADIEAAVNTYLGAHPPSGGVREFASFDLLCKAKPSKEGERVWLANHNPRLPAGNMAQGQGYFVGHIVTSSMKYRTPDGGLFAGVNTDKTYFWIRDISLEELNVTHFGAMGVVGVKSDNRAGAIDDSPALIAMYDCLKSAQTKAIFPNSEMAPVKFPAGAYMINPVDLTTRGAKTSDAKMLEARKKAIWTASRKPWDGNKFGQGVGTGGANVSKWENVDVDAVKNSTNADIKKLYVEFPASENHNGYEQAGFFGMTGPSVPYGRAPQVTIFSNKQQDSYVIDLKHSLCVIQGIEFDGEIKEGFNWNTDATKGPINGPAFTGTIAGGNLVVPSAPSNNQGFLHNWRNSGQYYSVTNFRAQSVGGRTFDVKDTLDSQFDQIYSGQCWGEVICVGWTNIIEGAWNHSTAVEISNSNFQQMLSKPAIVLARTAQSIVRNVWIEHSLCPADFSLSHLIMDMFCVESSNFDVHAWNSRITLNNLSNPTGVNIDLDTGPYLTGVTSWDPATWKINPKWHSNIALPDGSAFPSWDKYFAWPGGSYYFSNISAYEPNHLHTESYGIETRGTIKTGYSAGWRLQNYSEKEMWVRCGTFQNQQANGSAQAAWKASDAGKAYTESVIDFAYNAWLATAAGQAADDAAKTAKRKALSDGAYSKFGSGGLAGQTNFINSLTHWEIDVMGSRMNGKARDQLGFPVSPMNDEMDPLANTTEGLARINILNTKNANSQYTDTGGMLNWITHGDSCILDVRLSEWSGTPALWVKLAPWTLACSFFIRSTGNTHFEAGSWSMFKWDGSMQEMAPGAAGSIPIAGGLKAGQRKWSVHNDKAGIGINTDGTISLATAAPAKLPTTIDIASVQAWVQVNIGGVDCLIPAIKIPT
Physico‐chemical
properties
protein length:1218 AA
molecular weight: 130470,73530 Da
isoelectric point:5,35221
aromaticity:0,09031
hydropathy:-0,20205

Domains

Domains [InterPro]
DC_0717
ATT
339–481
DC_0717 DC_0716 DC_0387
YP_009843765.1
1 1218
Architecture
ATT
STR
STR
ATT 339-481 | STR 493-946 | STR 1021-1215 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009843765.1
1 1218
Domain Start End Length (AA) Confidence
N-terminal 1 469 469 0,9946
Central domain 470 964 496 0,9713
C-terminal 965 1218 253 0,7127
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-469
Central
470-964
C-terminal
965-1218

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_LIET2
[NCBI] 		2508071 Uroviricota > Caudoviricetes > Lietduovirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009843765.1 [NCBI]
Genbank nucleotide accession
NC_048751 [NCBI]
CDS location
range 38730 -> 42386
strand +
CDS
ATGTCAACAATGAATGGCGGCGCGGGTGGTATCCTGGTTTTACCCGGCCAGAACGGCGGGACCGCAGGCAATAAGCCGACCAGCAAACCGCAACCACCCAGCCTTCAGGACATCATCAGCGGGTCTGAAAAGACCGTCCTTTTTGCGCTTATCACTGAATTCCTGAAACTGAATCCCGACGCAGTCAGCGCTGCTGACCCGAAAGTGATCAAAGCAGCTGTTATTGAATATCTGGACCAGAATCCGATCACTGCCGGTCTGGATGCTGCGGCTGTCCAGGGATTGATCAACACATCAATTCAGGCAATCCGACAGGGACACACCGACACTGAAATCCAGAACATCATTAACACCTTCATTGCGACGAATCCGCCCAGCTTCAATGATGCGGTTAAAAAGTATCTGAAGGATAACCCGGTATCGGGTGGCGGTGGTCTGGGCGAAGATCAGATTAACGATCTGATTGAACTTTACATCGCCGCGAATGGCTACAACAACGACGCGAGCGACATCAATAATCTGATTCAGGGCTGGATTGCCTCGCATCCTATTTCGGCCACCATCGATCCTGCGGTGCTGACGAAGGCGATCACTGATTACCTGAAAGCAAACCCGGTTGTTCCTGATTCAGACGCTGTCGAAGCGGCTGTCACGGCCTATTTCAATGCCCATCCTCCAGCCGCTGGCGTCAGTCCTGCGCAGATGACGAAGGCGCTTTCGGACCTGCTGGCATCGACTGACTTCACCACGGCTGTTGTTGCTTCCATTAAGGCTGAAGAAGCAAACCTGTTAGCCCAGGACGCATTCAAAAATGCTGTTAACGGGATGATCACTGCCGCGTTGACTGCGAAGGATTTCACCGCTGACATTACCGCAGCTATCAATCAGTATTTCAGCACGCATCCGCAGCGCACTGACGCGCAGGTGAAAGCGCTGGTGGCCGCGTGGATCAATGATAACCCGCAAGGTCTAAGCCAGGCCGAAGTCGAAGCCGCCATCGTGGCATACCTGACCGCTAACCCGCCAGGTGATGTCAGCGCTGCTGATATTGAAGCCGCAGTGAACACCTATCTGGGCGCACATCCGCCATCTGGTGGTGTGCGTGAATTCGCATCGTTTGACCTGCTGTGTAAGGCTAAGCCGTCGAAAGAGGGTGAGCGCGTCTGGCTGGCAAACCACAACCCACGGTTACCGGCTGGCAACATGGCGCAAGGCCAGGGCTACTTCGTCGGTCACATTGTGACTTCATCAATGAAATATCGAACCCCGGATGGTGGTTTATTCGCTGGCGTTAACACGGATAAAACCTACTTCTGGATCCGCGATATTTCACTTGAAGAATTGAACGTTACCCACTTCGGCGCGATGGGTGTGGTAGGGGTGAAAAGCGATAACCGCGCTGGCGCTATTGATGACAGCCCGGCACTGATCGCGATGTATGACTGTCTGAAGTCAGCCCAGACTAAAGCAATTTTCCCGAACTCGGAAATGGCCCCGGTTAAATTCCCTGCTGGTGCGTACATGATCAACCCGGTCGACCTGACAACCCGTGGCGCGAAAACGTCTGATGCCAAAATGCTGGAAGCCCGTAAAAAGGCGATCTGGACAGCGTCCCGCAAACCATGGGATGGGAATAAGTTCGGCCAGGGCGTCGGCACTGGTGGCGCGAACGTGTCGAAGTGGGAAAACGTCGACGTGGACGCGGTGAAGAACAGCACGAATGCAGACATCAAAAAACTGTATGTCGAATTCCCGGCGTCAGAAAACCATAACGGTTACGAACAGGCTGGCTTCTTCGGCATGACCGGCCCGTCGGTTCCTTATGGCCGTGCGCCGCAGGTGACGATCTTCAGTAACAAACAGCAGGACAGTTACGTCATCGACCTGAAGCACTCGCTGTGTGTGATTCAGGGCATCGAATTTGATGGCGAGATTAAAGAAGGGTTCAACTGGAACACCGACGCGACGAAAGGCCCGATTAACGGTCCTGCGTTCACTGGAACCATTGCTGGCGGTAATCTGGTCGTACCATCTGCACCATCGAATAATCAGGGCTTTCTTCATAACTGGCGCAACTCCGGCCAGTATTACAGCGTGACCAACTTCCGCGCTCAGAGTGTCGGCGGTCGCACGTTCGATGTTAAAGACACACTGGACAGCCAGTTCGATCAGATCTATTCCGGCCAGTGCTGGGGTGAAGTGATCTGCGTAGGCTGGACCAATATTATTGAAGGTGCCTGGAACCATTCGACAGCTGTCGAAATCAGTAATAGCAACTTCCAGCAGATGTTAAGCAAACCGGCCATTGTGCTGGCACGAACTGCGCAATCTATCGTCCGTAACGTCTGGATTGAGCATTCACTTTGCCCTGCTGACTTCTCGCTAAGCCACCTGATTATGGATATGTTCTGCGTCGAATCGTCAAACTTTGACGTTCACGCGTGGAACTCACGCATAACGCTGAACAACCTGTCTAACCCGACTGGCGTGAACATCGATCTGGATACCGGACCTTACCTGACCGGCGTCACCAGCTGGGATCCTGCCACCTGGAAGATCAACCCTAAATGGCATAGTAATATTGCATTGCCAGATGGTTCTGCGTTCCCGTCATGGGACAAATACTTCGCATGGCCGGGCGGTTCGTATTACTTCAGTAATATTTCGGCATACGAACCAAACCATCTGCACACTGAAAGCTATGGTATCGAAACCCGTGGGACCATTAAGACGGGTTATAGTGCCGGATGGCGTTTGCAGAACTACAGCGAAAAGGAAATGTGGGTCCGCTGCGGTACGTTCCAGAACCAGCAGGCCAACGGCTCAGCTCAGGCAGCATGGAAGGCTTCAGATGCTGGTAAAGCCTATACCGAATCTGTTATCGACTTCGCCTATAATGCCTGGCTGGCAACCGCCGCAGGGCAGGCTGCTGACGACGCAGCGAAGACGGCAAAACGGAAGGCGCTCAGTGATGGGGCTTATTCAAAATTCGGTAGCGGTGGCCTCGCAGGTCAGACCAACTTCATCAACTCGCTGACCCATTGGGAAATCGACGTAATGGGTTCACGGATGAACGGCAAAGCGCGCGACCAGCTGGGCTTCCCGGTGTCGCCGATGAACGATGAAATGGATCCGCTGGCTAACACCACTGAAGGTCTGGCGCGAATCAACATTCTGAACACGAAGAATGCCAACTCGCAATACACCGACACTGGCGGAATGCTGAACTGGATCACGCATGGTGATTCATGCATCCTGGATGTGCGATTGTCTGAATGGTCCGGCACTCCGGCGCTATGGGTCAAACTTGCCCCATGGACGCTGGCATGTTCGTTCTTCATTCGCTCAACGGGCAACACCCATTTTGAAGCCGGATCATGGTCCATGTTCAAATGGGATGGGTCGATGCAAGAAATGGCCCCTGGTGCTGCCGGTAGCATCCCGATTGCTGGTGGTCTGAAAGCCGGTCAGCGTAAATGGTCAGTTCACAATGACAAGGCGGGGATCGGCATCAACACCGATGGCACGATTTCGCTTGCCACTGCGGCCCCGGCCAAACTGCCGACCACTATCGATATCGCCAGCGTCCAGGCGTGGGTTCAGGTGAATATCGGCGGGGTTGATTGTCTTATCCCGGCTATAAAGATTCCGACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e782a8e6eb86a0dcf6715584e4bc2675957c625c8952a1187a9d5c27355742e2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3079
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagM_LIET2 Truncaite,L., Simoliuniene,M., Kazlauskas,D., Meskys,R. and Simoliunas,E. 2011-08-10 — GenBank