Protein

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Genbank accession
QIQ62509.1 [GenBank]
Protein name
type V secretory pathway adhesin
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,50
Protein sequence
MTTIPHNREPFLDASGLVARSWRTYLSSLTQSDAATQLQRQIDQLRAAIPTESPNGSNSALNAQLLATGSVDVTGTLSSGFVTLSLEGDTRIPEATSYYGTDAAGAKGWHPVPVVSVNGNTGSVLLKVGTLADVDASAIADKKALVWDASSNKHMYADIPSGGGGGSTGAMRIENITSAAATLTQSQAGSYLRFTYSGAKTVTVPPGLPVSSGVITVLSNQSSGPLTLSAGAGMALNGSAGAFVLQQGEAATLVFLSSSEADVITASTTGQASYTTAICVAFNGKNQWGDIASLPSSVIGGTPHTILALYSPLGGFGSLSTRQAVFSGGALGTPQLRIGASSDETAFTYYESHADGSEPYGGIEGAGSATAGRWTAHAGKYVAGRCYAATHTAPWTDSDPSGTPSTTPTLVPPFTIARRYNAGSPDRYFNGYLHSLGVFNRALSSVEITDFFAHKDLTSINGLVSGWRFGTDGQTTVPNLVDGEAPCVLSGSPDYVRARI
Physico‐chemical
properties
protein length:500 AA
molecular weight: 51372,31000 Da
isoelectric point:5,57536
aromaticity:0,07800
hydropathy:-0,04660

Domains

Domains [InterPro]
DC_0914
STR
1–488
DC_0914
G3DSA:2.60.120.200
STR
261–485
G3DSA:2.60.120.200
IPR013320
STR
281–477
IPR013320
PF13385
LEC
322–448
PF13385
QIQ62509.1
1 500
Architecture
STR
STR 1-488 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIQ62509.1
1 500
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,5419
Central domain 272 471 201 0,4726
C-terminal 472 500 28 0,9244
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-471
C-terminal
472-500

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Xfas53
[NCBI] 		670252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xylella fastidiosa subsp. multiplex
[NCBI] 		644357 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xylella > Xylella fastidiosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIQ62509.1 [NCBI]
Genbank nucleotide accession
MT084350 [NCBI]
CDS location
range 21651 -> 23153
strand +
CDS
ATGACCACCATCCCCCACAATAGAGAACCGTTTCTTGACGCCTCAGGGCTGGTGGCGAGAAGCTGGCGCACCTATTTATCCTCGTTAACGCAAAGCGATGCCGCAACGCAGTTACAGCGGCAGATAGATCAGTTGCGGGCCGCTATCCCTACCGAATCCCCCAACGGCAGTAACAGTGCGCTCAATGCGCAACTGCTCGCAACAGGTTCAGTCGATGTAACAGGCACGCTTTCTAGCGGCTTCGTCACTTTGAGCCTTGAGGGAGATACTCGCATCCCAGAGGCTACTTCTTATTACGGCACCGATGCCGCAGGAGCGAAAGGCTGGCACCCCGTTCCGGTGGTTTCAGTGAATGGCAACACAGGGAGCGTCTTGCTGAAGGTGGGCACGCTTGCCGATGTGGACGCCTCCGCAATAGCAGACAAAAAAGCATTGGTGTGGGACGCCTCCTCTAACAAACATATGTACGCCGATATCCCCTCCGGGGGTGGGGGCGGCAGCACAGGCGCTATGCGCATTGAGAACATCACATCAGCCGCAGCCACCCTGACGCAATCCCAAGCAGGGAGCTATTTAAGGTTTACATATAGCGGAGCCAAGACGGTGACTGTCCCCCCTGGGTTGCCGGTATCGTCTGGGGTGATCACCGTGCTTTCCAATCAATCCAGCGGCCCCCTCACTCTCTCAGCGGGGGCGGGCATGGCTCTTAACGGGTCGGCAGGCGCGTTTGTGCTGCAACAGGGCGAAGCCGCCACCCTTGTGTTCCTGAGCAGCAGCGAAGCGGACGTCATCACAGCAAGCACCACCGGACAAGCCAGCTACACGACCGCTATTTGCGTTGCGTTCAACGGTAAAAACCAATGGGGTGACATCGCATCGCTTCCCTCATCGGTCATTGGGGGTACGCCGCACACTATTCTGGCGCTTTACAGCCCGCTCGGCGGCTTCGGTTCTCTCAGCACACGCCAAGCGGTATTCAGCGGCGGCGCATTAGGAACGCCACAACTACGTATCGGCGCTTCCTCCGACGAAACCGCATTCACCTATTATGAGTCTCATGCGGACGGGTCCGAGCCATACGGCGGGATTGAGGGCGCGGGTTCTGCCACAGCGGGGCGTTGGACTGCTCACGCAGGCAAATACGTTGCGGGGCGTTGCTATGCCGCTACGCACACCGCACCGTGGACGGACTCCGACCCAAGCGGCACACCATCAACCACACCAACCCTTGTGCCCCCGTTCACTATTGCGCGTCGATATAACGCAGGGTCACCCGATCGTTATTTCAATGGTTATCTGCATAGCCTTGGCGTATTTAACAGGGCGCTTTCCAGTGTTGAAATTACTGATTTCTTCGCGCACAAGGATTTAACGTCTATCAATGGTTTGGTGTCGGGATGGCGGTTCGGAACCGACGGACAAACAACCGTGCCTAACTTAGTGGACGGCGAAGCGCCCTGCGTGCTTTCTGGATCGCCGGATTACGTCCGTGCGCGCATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
22ff699fd87323734a9e464db2f0c12bc81873f64dee96101e54057dd16e6e8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7667
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete circularized genome data of two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) using hybrid assembly approaches Arias-Giraldo,L.F., Giampetruzzi,A., Metis,M., Marco-Noales,E., Imperial,J., Velasco-Amo,M.P., Roman-Ecija,M. and Landa,B.B. 2020-05 — GenBank