Protein

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Genbank accession
AGG54576.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,72
Protein sequence
MSSVTQTIPTLTGGLSQQPDELKIPGQVSIATNVIPDVTHGLLKRPGGQLVASISDNGTSALNSQTNGKWFSYYRDETESYIGQVSRSGDINMWRCSDGAAMVVNYDSGTASALATYLTHTNDQDIQTLTLNDFTFITNRTKTVAMSSTVETVRPPEVFIDLRATAYARQYAVNLYDNTNTTTETTATRISVDLVKSSNNYCNASDGTLPSRANRISATGRCTINAGDGRDAYAPNVGTRIFDIDDGASLTDEALSGNHTYTIDVKAANGSSVNRGTNLYFRIRTTGQSVPFTTGSGTNQTTTYQARYTTTFDLLYGGSGWQQGDYFYVWMDDGYYKVVIEAISTTQIQANLGLIRPNPTPFDTETTITASGILGDIRQAIIDTGNFTSANVQQIGNGLYITRPSGTFNATAPTSDLLKVMSSEVKSVDDLPDQCKHGYVVKVANSEADEDDYYVKFFGNNDRDGDGVWEECAKPGRNIEFDKGTMPIQLVRQANGTFLVSQATWENAEVGDDLTNPNPSFVGKTVNQLVFFRNRLVFLSDENVIMSRPGEFFNFWSKTATTFTPMDVIDLSCSSEYPAIVYDGIQVNAGLLLFTKNQQFMLTTDSDILSPETAKLNAVASYNFNEKTNPINLGTTVAFIDNANQFTRFFEMSNVLRQGEPDVVDQSKVISRLLDKDISLVSESRENSAVFFSKKDTDTIYCFRYFTSGEKRLLQAWCTWTVVGNIQYHCMLDDALYVITRNNNKDQMVKYSLKLDDSGHFVTDTRDTADTKDDYVYRVHLDHASSVTAASGTYSSANIKTTIPKPNGYESTKQLVAYETDAGNDLGRYALITVNGSNLEIPGDWSNNTFVIGYLYEMDVQIPTLYVSRVEGDKYRSDAKSSLIIHRIKFSFGPLGVYSTTLQRVGKPDYTETKELALAGFVSASRLPIVNEVIETVPCYERNTNLTVNVKSSHPAPATLYSLAWEGDFTNRFYRRV
Physico‐chemical
properties
protein length:977 AA
molecular weight: 108036,73470 Da
isoelectric point:4,90688
aromaticity:0,10133
hydropathy:-0,35527

Domains

Domains [InterPro]
IPR058003
TTP
1–189
IPR058003 DC_1232 IPR058003
IPR058003
TTP
1–180
IPR058003
AGG54576.1
1 977
Architecture
TTP
STR
TTP
TTP 1-189 | STR 197-356 | TTP 363-975 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54576.1
1 977
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,8370
Central domain 147 345 200 0,8221
C-terminal 346 977 631 0,2891
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-345
C-terminal
346-977

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSP3
[NCBI] 		382273 Uroviricota > Caudoviricetes > Autographivirales > Tritonvirus > Tritonvirus PSSP3
Host Prochlorococcus marinus
[NCBI] 		1219 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54576.1 [NCBI]
Genbank nucleotide accession
HQ332137 [NCBI]
CDS location
range 20001 -> 22934
strand -
CDS
ATGTCTAGTGTTACTCAAACAATACCAACTCTGACTGGAGGGTTATCTCAACAGCCAGATGAACTAAAAATTCCCGGACAAGTTAGTATCGCTACTAACGTAATACCTGATGTAACACATGGCTTACTGAAACGTCCGGGTGGGCAGTTAGTTGCATCTATTAGTGATAATGGAACTTCAGCTTTAAATTCCCAAACAAACGGTAAATGGTTTTCTTATTACCGTGATGAAACAGAAAGTTATATAGGACAAGTCAGTAGATCTGGCGATATAAATATGTGGAGATGTAGTGACGGTGCAGCGATGGTTGTTAACTATGACTCAGGAACTGCAAGTGCTTTAGCTACATATTTAACTCACACCAATGATCAAGATATACAGACCTTAACTTTAAATGACTTCACTTTTATAACTAACAGAACTAAGACAGTAGCTATGTCTTCTACTGTAGAAACTGTTAGACCTCCTGAAGTTTTTATTGATTTAAGAGCTACAGCTTATGCAAGACAATATGCTGTAAATCTATATGACAACACAAACACAACAACTGAAACTACAGCCACAAGAATTAGTGTTGACCTAGTTAAGTCAAGTAATAACTATTGTAATGCTAGTGATGGTACTTTACCATCTAGAGCAAATAGAATATCTGCTACTGGTAGATGTACAATTAATGCTGGAGATGGAAGAGATGCATACGCACCAAACGTAGGAACTAGAATATTTGATATTGATGATGGAGCAAGTCTTACAGATGAAGCTTTATCTGGAAACCATACTTATACTATTGATGTTAAAGCTGCTAATGGTAGCTCAGTAAATAGAGGAACCAATTTATATTTTAGAATTAGAACCACTGGACAGTCAGTTCCGTTTACAACTGGTTCTGGAACTAATCAAACAACTACCTATCAAGCAAGATATACTACGACTTTTGATCTTTTATATGGTGGTTCTGGTTGGCAACAAGGTGATTATTTCTATGTTTGGATGGATGATGGCTATTACAAAGTAGTTATTGAAGCTATTAGTACTACACAAATACAAGCAAACTTAGGATTAATTAGACCTAACCCAACACCTTTTGATACTGAAACTACAATCACTGCTTCAGGAATACTTGGAGATATAAGACAAGCAATTATAGATACTGGTAATTTTACTTCTGCTAATGTTCAACAAATTGGTAATGGTTTATATATAACCAGACCATCAGGTACATTTAACGCTACAGCTCCTACAAGTGACTTACTTAAAGTCATGTCTAGTGAAGTTAAAAGCGTAGATGATTTACCAGATCAATGTAAACATGGTTATGTAGTTAAAGTAGCTAACAGTGAAGCAGACGAAGATGATTACTATGTAAAATTCTTTGGTAATAATGACAGAGATGGTGATGGAGTTTGGGAAGAATGTGCAAAACCCGGTAGGAATATAGAGTTTGATAAAGGCACTATGCCTATACAATTAGTTAGACAAGCTAATGGTACATTTTTAGTCTCACAAGCTACTTGGGAAAATGCTGAAGTAGGAGACGATTTAACTAACCCAAACCCTTCCTTTGTTGGTAAAACAGTTAATCAATTAGTTTTCTTTAGAAACAGATTAGTATTCTTAAGTGATGAAAACGTAATCATGTCAAGACCGGGAGAGTTTTTCAACTTCTGGTCTAAGACTGCTACGACTTTCACACCTATGGATGTTATAGATTTATCTTGTAGTTCTGAATATCCAGCAATTGTTTATGACGGTATTCAAGTAAATGCTGGATTACTATTATTTACTAAAAATCAGCAATTTATGCTGACTACTGATAGTGATATTTTAAGTCCAGAAACTGCAAAGCTTAATGCAGTAGCATCATATAACTTTAATGAAAAAACTAATCCAATTAACTTAGGAACTACAGTTGCGTTTATAGATAATGCTAATCAATTTACTAGGTTTTTTGAAATGTCTAATGTTCTTAGACAAGGAGAACCAGATGTAGTTGATCAAAGTAAAGTTATTTCTAGACTATTAGATAAAGATATAAGTTTAGTATCTGAATCCAGAGAAAACTCAGCTGTATTTTTTAGTAAAAAAGATACAGATACAATTTATTGTTTTAGGTATTTCACTTCTGGTGAGAAACGATTACTACAAGCTTGGTGTACTTGGACTGTAGTTGGTAATATCCAATATCATTGCATGCTAGATGATGCTTTATATGTAATTACACGTAATAACAATAAAGATCAGATGGTTAAATATTCTTTAAAACTGGATGATAGTGGTCACTTTGTAACTGATACAAGAGACACTGCTGATACAAAAGATGACTATGTATATCGTGTTCATTTAGATCATGCTTCGTCAGTTACAGCAGCTTCAGGTACATATAGTAGTGCAAACATTAAAACTACTATTCCTAAACCAAATGGTTATGAAAGCACTAAACAGTTAGTTGCCTATGAAACTGATGCTGGTAATGATCTTGGTAGATATGCCTTAATTACTGTTAATGGTAGTAATTTAGAAATTCCGGGAGATTGGTCAAACAATACTTTTGTTATTGGATATTTATATGAGATGGATGTTCAAATTCCTACCTTATATGTAAGTAGAGTAGAAGGTGATAAGTACCGATCAGATGCTAAATCATCCTTAATTATTCATAGGATTAAATTTAGCTTTGGACCATTAGGAGTATATTCAACAACCTTACAAAGAGTAGGTAAACCTGACTACACAGAAACTAAAGAACTAGCTCTAGCTGGTTTTGTATCTGCTAGTAGATTACCGATAGTAAATGAAGTTATAGAAACAGTACCTTGTTACGAGAGAAATACAAACTTAACAGTAAACGTTAAATCATCACATCCCGCACCAGCCACATTATATTCATTGGCATGGGAAGGAGACTTTACAAACAGATTTTATAGACGTGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee1762fe35015febc8c6e3cf9b73b5f387eab370fb10fa169cc8b5c0e9faf20c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7729
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSP3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank