Protein

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Genbank accession
XCD06212.1 [GenBank]
Protein name
tail collar protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MAIDQVKTINELERLPQLLGNYAAAISTGAATGSATIDQIREYVRQTLDNDFFQTGMMIPYGGNNAPQGWLKCDGSAISRETYADLFAVIGTKYGSGDGSTTFNIPNLTSPVFSGTLPVVGNGSPVNFIIERTGDNAKALRTWWSDPGHNGDLFMYRTSSSNVNKLPQGVSGENTFNNTTNLVGLSEDKNFSGMIARAETTNINMIIKY
Physico‐chemical
properties
protein length:209 AA
molecular weight: 22578,93040 Da
isoelectric point:4,96570
aromaticity:0,09091
hydropathy:-0,28947

Domains

Domains [InterPro]
DC_1413
STR
2–209
DC_1413
IPR037053
ATT
45–108
IPR037053
SSF88874
STR
50–180
SSF88874
IPR011083
ATT
56–109
IPR011083
XCD06212.1
1 209
Architecture
STR
ATT
STR
STR 2-44 | ATT 45-109 | STR 110-209
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dulem virus 29
[NCBI] 		3145747 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD06212.1 [NCBI]
Genbank nucleotide accession
PP511642 [NCBI]
CDS location
range 13191 -> 13820
strand +
CDS
ATGGCAATAGATCAGGTAAAAACAATTAACGAATTAGAGCGTTTGCCGCAACTTTTAGGCAATTATGCGGCCGCCATTTCTACAGGTGCTGCTACAGGTTCGGCAACAATCGACCAGATACGCGAGTATGTTCGGCAGACTTTAGACAATGATTTTTTCCAGACAGGAATGATGATTCCGTACGGCGGGAACAATGCCCCACAGGGTTGGCTGAAGTGTGACGGCTCCGCAATTTCGCGCGAAACATACGCCGACTTGTTCGCCGTCATCGGTACAAAATACGGATCCGGTGATGGCTCTACGACTTTTAATATCCCAAACTTAACAAGCCCTGTTTTTAGCGGGACTCTTCCTGTCGTCGGTAATGGATCGCCGGTAAATTTTATTATTGAAAGAACAGGAGATAACGCTAAGGCACTCCGAACTTGGTGGAGCGATCCCGGTCACAATGGTGATTTATTTATGTATAGAACATCATCATCTAATGTTAATAAACTACCTCAGGGTGTAAGCGGCGAAAATACTTTTAATAATACAACTAATTTAGTAGGTTTATCGGAAGACAAAAATTTTAGCGGCATGATCGCAAGAGCTGAAACAACAAATATAAATATGATTATCAAATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d3410cdadb15559729e58007c834ea9374a3af856e2dd49a99eb1c05e55103c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6635
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse circular DNA viruses in blood, oral, and fecal samples of captive lemurs Paietta,E.N., Kraberger,S., Lund,M.C., Custer,J.M., Vargas,K.M., Ehmke,E.E., Yoder,A.D. and Varsani,A. 2024-07-08 — GenBank