Protein

View in Explore
Genbank accession
WCD42967.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
Protein sequence
MAVAYPTIPIPDLEDAETVLSDDFLVVNQTDGTRKAKIDDVVNDLSITKIVYFTEGGYLKSKKDFAYDPETKRYYTWNGDYPKIILPDSTVEGAGGVSANAWSVFGELAATSSGRIVDYGSIGGQLDMDLEVADTFKVRLTSNTTISFENQTEGLEGVARTITVCITQTSGGNKVYWPDNVKWAYGRDPILTFTAGATDIFKLETYDNGLTWYGALIIAGAI
Physico‐chemical
properties
protein length:222 AA
molecular weight: 24218,78500 Da
isoelectric point:4,34656
aromaticity:0,11261
hydropathy:-0,13288

Domains

Domains [InterPro]
DC_1864
STR
13–222
DC_1864
G3DSA:2.10.10.80
ATT
47–104
G3DSA:2.10.10.80
IPR040775
RBD
51–105
IPR040775
WCD42967.1
1 222
Architecture
STR
ATT
STR
STR 13-46 | ATT 47-104 | STR 105-222
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCD42967.1
1 222
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,7715
Central domain 207 211 6 0,0042
C-terminal 212 222 10 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-211
C-terminal
212-222

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ECML-10
[NCBI] 		2910935 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCD42967.1 [NCBI]
Genbank nucleotide accession
OL631479.1 [NCBI]
CDS location
range 41136 -> 41804
strand -
CDS
ATGGCTGTAGCTTATCCTACAATACCAATTCCAGATCTTGAAGATGCAGAAACAGTCCTGAGTGATGACTTCTTGGTTGTCAACCAGACTGATGGGACAAGAAAGGCTAAGATTGACGATGTTGTCAACGATCTTAGCATTACTAAGATAGTCTATTTCACAGAGGGTGGTTATCTTAAGAGCAAGAAGGACTTTGCTTACGACCCCGAAACTAAGCGCTACTACACGTGGAACGGGGATTATCCTAAAATAATCCTCCCAGACTCCACTGTAGAGGGTGCTGGGGGTGTGTCTGCAAATGCCTGGTCTGTTTTTGGTGAGCTTGCTGCAACTTCTTCTGGCAGAATAGTTGATTACGGATCTATCGGTGGTCAGCTTGATATGGATCTTGAAGTTGCGGATACCTTTAAAGTTCGACTAACTTCAAATACCACAATCTCTTTTGAAAATCAAACAGAAGGTCTTGAAGGGGTGGCGAGAACTATAACCGTATGCATTACGCAGACCTCTGGCGGCAACAAAGTCTATTGGCCTGATAATGTTAAATGGGCTTATGGAAGAGATCCTATCCTAACATTCACGGCTGGTGCAACAGACATTTTCAAGTTGGAAACCTACGACAACGGGTTAACTTGGTACGGGGCACTGATTATCGCAGGAGCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7309ab65bb5e0fdf703e3a753216e2e8c89401ee3ab80a32a42d0e871ffd59ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9018
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virulent bacteriophages provide an effective reduction of big-seven Shiga-toxin producing Escherichia coli on various foods Vikram,A., Woolston,J., Hickey,S. and Sulakvelidze,A. 2023-09 — GenBank