Protein

View in Explore
Genbank accession
XVC02223.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MADLKVGSTVGGSVIWHQGNFPLNSAGDDVLYKSFKIYSEYNKPQAADNDFVSKANGGTYTGPITINYGVNSYLQLSNNETPIRIRSGGGTGNTLVVGGSSGGISFRPAGSEITTGQITITPEGLTTFTRAVTAPSVTVTSTPSAASDVTRKDYVDGAINIVTANANSRVLRKGDTMTGNLTAPNFFSQNPASQPSHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:216 AA
molecular weight: 22785,91800 Da
isoelectric point:6,72192
aromaticity:0,08796
hydropathy:-0,27731

Domains

Domains [InterPro]
DC_0466
STR
1–214
DC_0466
IPR005601
STR
140–190
IPR005601
XVC02223.1
1 216
Architecture
STR
STR 1-214 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVC02223.1
1 216
Domain Start End Length (AA) Confidence
N-terminal 1 108 108 0,4516
Central domain 109 205 98 0,1718
C-terminal 206 216 10 0,9669
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-108
Central
109-205
C-terminal
206-216

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage TOPO13
[NCBI] 		3425925 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVC02223.1 [NCBI]
Genbank nucleotide accession
PV658497 [NCBI]
CDS location
range 150360 -> 151010
strand -
CDS
ATGGCTGATTTAAAAGTAGGTTCAACTGTAGGTGGATCTGTCATTTGGCATCAAGGAAATTTTCCATTGAATTCAGCCGGTGACGATGTACTCTACAAATCATTTAAAATATATTCAGAATATAATAAACCACAGGCAGCTGATAACGATTTCGTTTCTAAAGCTAATGGTGGCACTTACACCGGTCCAATTACTATTAATTACGGGGTAAATAGTTATCTTCAATTAAGTAATAATGAAACCCCCATTCGAATTCGTTCTGGTGGCGGTACCGGTAATACTCTTGTAGTTGGTGGCTCTTCCGGCGGTATTAGTTTTAGACCGGCAGGTAGTGAAATCACTACTGGACAAATTACTATTACGCCGGAAGGTTTGACAACATTTACCAGGGCCGTAACGGCTCCATCGGTAACTGTTACATCTACTCCTTCCGCAGCATCTGATGTTACTCGTAAAGATTATGTCGATGGAGCAATAAATATTGTTACGGCAAATGCGAATTCTAGAGTTTTGCGTAAAGGTGACACCATGACAGGTAATTTAACAGCGCCAAACTTTTTCTCGCAGAATCCTGCATCTCAACCCTCGCATGTTCCGCGATTTGACCAAATCGTGATTAAGGATTCTGTTCAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c7244da54218e0b3efb0e2bfa898918733fe1840f68e0bd327154b75df7aef30
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7772
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50