Protein

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Genbank accession
ATE85660.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATVPTNNPIPSEDPRDLKFNAGKIDEVVNSDAHYYTDRFGKQRWTMAGFQKTTQDAIRSYGYITMDGFEDGATLTLPNQVLRYEATGEYYRWDGDFPKTVSSGSTPETAGGVGSGAWLSVGDGSLRADLSSTDDGRGCSLIGTSDGSNVQEALDDINNTIYQDPLTKWPLGGTLKIKQGVYDVSSALTLDYGNYDATFIGSPGVRAHYVGENMAETIFNCQVADFNLKMLGDTVGATQRVHAYDYLGNITLKGSATSYGLLVTKKAYTKLENIVSYGHTNGEGLRTDSVLTAELDNVYLQSNRIGWRVLNTGDESELNAITVNRLTASQNTQWGILGDRWGAGTTINSLTCEGNGTQGDSGTGGMQIAVNGLNGSCALVLNNPYFEANAGGSDLAIDNTGTRPVTVIINGGNFHRVSSTAYTVNNLSITSSGGGKVTVILNGTTFQSVGSYVPSSARPYWVTGANCEVIDIGCTFMEQTSKATSVSSGSIPRSGRINSNGSIDVAPGVSSVNMVTTGVYDVTFSQQLSTSANGYVVQITPISAPDSVSCDVIYSSTTSFRVTLRNTVSGAGIASAFAFSVTRLV
Physico‐chemical
properties
protein length:585 AA
molecular weight: 61935,68340 Da
isoelectric point:4,78678
aromaticity:0,08376
hydropathy:-0,20684

Domains

Domains [InterPro]
DC_1559
ATT
1–169
DC_1559 DC_0499
IPR040775
RBD
61–123
IPR040775
G3DSA:2.10.10.80
ATT
62–133
G3DSA:2.10.10.80
ATE85660.1
1 585
Architecture
ATT
STR
ATT 1-169 | STR 288-583 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATE85660.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9934
Central domain 148 479 333 0,9940
C-terminal 480 585 105 0,9734
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-479
C-terminal
480-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf11 SMD-2017
[NCBI] 		2282196 Uroviricota > Caudoviricetes > Cedarrivervirus >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATE85660.1 [NCBI]
Genbank nucleotide accession
MF158038 [NCBI]
CDS location
range 8739 -> 10496
strand -
CDS
ATGGCTACCGTACCAACAAATAATCCAATCCCAAGCGAAGACCCGCGCGATTTGAAATTTAATGCTGGCAAAATAGACGAAGTTGTCAACTCTGACGCGCATTACTATACCGATCGCTTTGGTAAGCAACGCTGGACAATGGCTGGTTTTCAAAAAACAACACAAGATGCCATTCGTAGCTATGGTTACATAACGATGGATGGTTTTGAAGATGGCGCAACACTGACGTTGCCTAATCAGGTGCTGCGATATGAAGCCACTGGCGAATATTATCGTTGGGACGGCGATTTTCCTAAAACTGTTTCTTCTGGCTCAACTCCAGAAACTGCTGGTGGTGTTGGTTCAGGCGCATGGCTAAGTGTTGGCGATGGAAGTTTGAGAGCAGACCTATCAAGCACAGACGATGGAAGAGGGTGTTCTTTAATTGGGACAAGCGACGGTAGTAATGTGCAAGAGGCTTTGGATGATATTAATAACACAATATACCAGGATCCTCTTACCAAATGGCCTCTTGGTGGCACGTTAAAAATAAAACAAGGGGTGTATGATGTATCCTCAGCACTTACCCTCGATTACGGCAACTATGACGCTACGTTTATAGGCTCTCCAGGAGTGCGCGCCCATTACGTAGGCGAGAACATGGCAGAAACCATCTTTAATTGTCAGGTTGCTGATTTTAACCTCAAGATGCTAGGGGATACCGTCGGGGCAACCCAACGAGTGCATGCATATGATTATCTCGGGAATATTACGCTTAAAGGATCAGCAACGTCTTACGGTCTTCTCGTAACCAAGAAAGCATATACCAAGTTAGAGAACATAGTATCTTACGGACATACCAACGGAGAAGGTTTACGAACAGACTCTGTATTAACAGCAGAGTTGGATAATGTGTACCTCCAGTCAAATAGAATCGGATGGCGAGTTCTTAATACTGGTGATGAATCTGAGCTTAATGCAATTACTGTCAACAGATTAACAGCAAGCCAGAATACACAGTGGGGCATTCTTGGTGATAGGTGGGGTGCAGGTACTACCATCAATAGCCTTACCTGTGAAGGTAACGGCACACAAGGGGATTCTGGTACTGGGGGTATGCAGATTGCTGTGAACGGCCTTAATGGGTCGTGCGCTTTGGTGCTTAATAACCCGTATTTCGAGGCTAACGCCGGTGGTTCTGACCTTGCCATTGACAACACAGGAACAAGACCCGTCACCGTAATTATTAACGGCGGCAACTTCCATCGTGTTAGTAGTACGGCGTATACAGTAAACAACTTAAGCATTACAAGTTCTGGTGGGGGGAAAGTAACTGTAATTCTCAACGGTACTACATTCCAGAGCGTAGGTTCTTACGTACCAAGCAGCGCACGACCGTACTGGGTTACCGGCGCTAACTGCGAAGTAATTGATATTGGCTGTACTTTCATGGAGCAAACAAGTAAAGCAACATCCGTTTCCTCTGGCAGCATTCCTCGTTCTGGGAGGATTAACTCAAATGGCAGTATTGATGTAGCACCTGGTGTATCCTCAGTAAACATGGTAACTACAGGCGTTTATGATGTGACATTTTCTCAGCAATTATCCACGTCAGCTAATGGTTATGTGGTACAGATAACGCCAATATCAGCCCCTGATTCCGTGAGTTGTGATGTTATATATAGCAGCACAACCAGCTTCAGGGTTACACTGAGGAACACTGTCAGCGGCGCAGGCATAGCAAGCGCATTCGCTTTTAGTGTTACAAGGCTTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c034b17428c57fab060fee144e3ccc29a8bdbbd669e16bc53db9bec83426299d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8109
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank