Protein

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Genbank accession
XQQ52603.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,58
Protein sequence
MNEMFSQGGKGSTGILTNKQAIARKFGVKQNEVVYFSVGALLDGYKVIYDKVTQRAYSLPANLGSEVTAVSLSTAGVLVHSAGNVDLGALAVTREEYVTLPGSFDTGVTVNTKNELVVFTDGKYRWDGELPKVVPAGSTPDSTGEVKLGAWVSVGDASLRADIAKPTGTNLIGAKNGETLSTVLGSRWANSGADKKEIRFDLPLLFPDYDAILAAHPDWTFIYPGSFCIGDDGKIYIAYGPSNNAATERFVVVYSGEGEYLGYLQTNNGGTGVNGSAVSEGIIVTNYYGSLKLFLGSYDGNLAEFDISAVTYGTTISYTALHQVGLYNQFSFHNGMWAVEQAIPALGINRQRNAIAYFNSAFALTGFTEFSPYDAGYITATTTDYGSLQTKRQAICLAPGVLIMAFGGVYITGTTVEAPTNYQGVKAFSTDGHKMVEAVIPPTGFISVLDAKGLTTSRIENEGICYSNGEVFTLWIYNDRTTSNAYTHGILITKEYSNFPDLDFSAVTTVSPGYDTIRMASGVYPRILAGDVLYNPLTGIAMTSLSAVLDFMRLSGQKAVTIYTSSTGLTDLAGVAYPIGIELHISNLNNQSFSIDQTGPTTRKTVRVTYDTSGYTVVTAATGLETYRLTLNNTDSGSLTQGRIAARAFGNTTLTEAEQILVLDQQSSASAHSLILGGGSSLFKSATTISFATNPSPATLGGTIRWRLDDTSLRPYTDNAYNLGNPSLRVAQVFAAIGTINTSDSREKTDPSEISDDILDAWGDVQVITYKWLASIASKGEDSARWHFGVIAQQVRDTFIKHGLDGTAFGLLCYDEWEDEYEPEFVDEIVTVNIDGVDTEVTRQVETGNTLLTRAAGNRWGIRPDQCFWLEAAYQRRRCDRIEERLKKLEAK
Physico‐chemical
properties
protein length:892 AA
molecular weight: 96354,62040 Da
isoelectric point:4,92126
aromaticity:0,10202
hydropathy:-0,10527

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–96
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR036388
DC_0539
STR
31–766
DC_0539 Coil
IPR040775
RBD
91–156
IPR040775 IPR036388
IPR030392
CHP
743–804
IPR030392
IPR030392
CHP
743–892
IPR030392
cd10144
CHP
743–878
cd10144
XQQ52603.1
1 892
Architecture
ATT
STR
RBD
ATT 1-165 | STR 166-766 | RBD 767-892
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQQ52603.1
1 892
Domain Start End Length (AA) Confidence
N-terminal 1 191 191 0,9943
Central domain 192 457 267 0,9888
C-terminal 458 892 434 0,6447
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-191
Central
192-457
C-terminal
458-892

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PBM-3
[NCBI] 		3402001 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia sp.
[NCBI] 		1884818 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQQ52603.1 [NCBI]
Genbank nucleotide accession
PV053165.1 [NCBI]
CDS location
range 9733 -> 12411
strand +
CDS
ATGAACGAAATGTTCTCACAAGGTGGTAAAGGCTCCACTGGTATTCTTACCAACAAACAAGCCATTGCCCGTAAGTTTGGTGTTAAGCAGAATGAGGTTGTTTACTTCTCAGTTGGTGCATTACTCGATGGCTACAAAGTTATTTATGACAAGGTAACTCAGCGAGCATATTCCTTACCAGCTAACCTTGGTTCTGAGGTTACTGCTGTAAGTCTTAGTACTGCTGGGGTATTGGTCCACTCTGCTGGTAATGTGGACTTAGGTGCATTGGCTGTTACTCGTGAAGAGTATGTGACCTTGCCTGGTTCATTTGATACCGGTGTAACAGTTAATACTAAGAATGAATTAGTTGTCTTTACCGATGGTAAGTATCGCTGGGATGGCGAGCTGCCTAAAGTAGTGCCCGCTGGTTCAACTCCAGACAGCACGGGTGAGGTTAAATTAGGAGCGTGGGTTAGTGTTGGTGATGCGTCATTGCGCGCCGATATTGCAAAACCAACCGGAACAAATTTAATTGGCGCAAAAAACGGGGAAACACTGTCTACAGTCCTGGGTAGTCGTTGGGCTAATTCGGGCGCAGATAAAAAAGAAATTCGTTTTGACCTGCCATTACTATTCCCAGATTACGATGCGATTCTGGCGGCACACCCTGACTGGACGTTTATTTATCCAGGGTCATTCTGTATCGGGGATGATGGCAAAATCTATATTGCATACGGCCCAAGTAATAACGCAGCGACGGAACGTTTCGTTGTAGTTTACTCAGGGGAAGGTGAATACTTAGGGTATCTCCAGACTAATAATGGAGGCACTGGGGTAAATGGTTCTGCGGTATCCGAAGGGATTATCGTAACCAATTACTATGGTTCACTTAAGTTATTCCTGGGGTCTTACGATGGTAACTTAGCTGAGTTTGATATCTCAGCGGTGACCTACGGCACCACGATTAGCTATACAGCCTTGCATCAGGTAGGTCTGTATAACCAGTTCTCCTTCCACAATGGAATGTGGGCAGTTGAACAGGCCATCCCAGCGTTGGGCATTAACCGCCAACGTAATGCTATTGCGTACTTCAACTCCGCATTTGCATTAACTGGCTTCACGGAATTTTCTCCGTATGACGCTGGATACATCACGGCAACTACTACTGATTATGGGTCACTTCAAACTAAGCGACAAGCAATCTGTTTAGCTCCTGGTGTTTTGATTATGGCATTCGGTGGTGTGTACATTACAGGAACAACTGTAGAAGCGCCTACTAATTATCAGGGGGTAAAAGCGTTCAGCACCGATGGGCACAAAATGGTAGAGGCAGTAATTCCTCCTACTGGTTTTATTAGTGTCCTGGATGCTAAAGGCTTAACGACTTCTCGTATAGAGAATGAGGGCATCTGCTATTCAAATGGTGAAGTGTTCACCTTATGGATCTATAACGACCGAACCACCTCGAATGCGTATACGCATGGAATCCTAATTACCAAAGAGTATTCCAATTTCCCGGACTTGGATTTTTCTGCGGTGACAACGGTATCCCCAGGTTACGATACCATTCGGATGGCTTCTGGGGTTTATCCACGAATACTCGCAGGCGACGTACTCTATAACCCTCTGACCGGTATTGCCATGACTTCATTGTCAGCAGTATTGGACTTTATGCGGTTGTCCGGGCAGAAGGCAGTTACTATCTATACATCAAGCACCGGTCTTACAGACCTGGCTGGAGTTGCCTACCCAATCGGGATAGAGCTTCATATTAGCAACCTGAATAACCAGAGCTTCTCTATAGATCAGACCGGGCCAACTACCCGTAAAACTGTTCGTGTTACTTATGACACCTCCGGTTACACAGTAGTTACTGCGGCTACTGGTTTGGAGACTTACCGTTTAACTTTAAACAATACTGACTCTGGGTCTTTAACTCAGGGGCGTATCGCTGCCAGAGCTTTCGGTAACACAACTTTAACCGAAGCAGAACAGATTCTTGTCCTCGATCAACAAAGTTCCGCATCTGCACATTCTCTTATTTTAGGTGGCGGCTCTTCATTATTTAAGAGTGCTACGACTATTAGTTTTGCTACTAATCCGTCGCCCGCAACCCTAGGTGGCACTATTCGATGGCGTTTAGATGATACATCTCTACGTCCATACACAGATAATGCTTACAATTTAGGTAATCCATCATTACGTGTGGCTCAAGTATTCGCGGCAATTGGTACTATTAATACGTCTGATTCCCGTGAAAAAACTGATCCTTCTGAAATATCGGATGATATCCTTGATGCCTGGGGCGATGTACAGGTGATCACTTATAAGTGGTTAGCTTCTATCGCATCTAAAGGGGAGGACTCTGCTCGTTGGCATTTTGGGGTAATTGCCCAACAGGTTCGTGACACGTTCATCAAGCATGGATTGGATGGTACTGCCTTTGGCCTGCTTTGTTACGACGAGTGGGAAGATGAATATGAACCTGAGTTCGTTGATGAGATTGTTACTGTTAATATTGATGGTGTCGATACCGAAGTTACCCGTCAAGTGGAAACCGGTAATACCCTACTTACTAGAGCTGCCGGTAATCGCTGGGGCATTCGTCCCGATCAGTGTTTCTGGTTGGAGGCCGCTTATCAGCGACGCCGCTGTGATCGTATTGAAGAGCGATTAAAAAAACTGGAGGCTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e5b792952b26c2911f3af2513c9fc1c9719eeab8265f56a740337ca4436b1ca1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6138
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50