Protein

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Genbank accession
ASD50268.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPKSGAMAPYVVVNRDAAVAGVFSVDGEAGAVVLTSKYLQITKYTTDKAATDASINSINESIGNINTALGGINTTLGTKAAKGANNDITELNALTKAITIAQGGTGATTLEGAKKALQVERLRQQSNGTFIVSPNEKYSLFIYDSGDFGLLDNSTAAVQALKVAFGGTGGTTPKAARKNLNVPVGASAEKIADGEDVLNYIAVAGQSGYYSSGELIVNGPPKQEGWWAYNFHCHGVDINGAAQYGTLKATGALGSTWINILDGTDNWRGWKEQFNTQSIIQFSNGGTGATSKDGARTNLDIDRFKQSATETMVYAPGSGFRITARPNGEWGTWRDDTGTWVPLAITAGGTGANSADQARKNLELTEWNLLSSMDGKYPNGFNFDTLAVNSKFTVPPTGGNIVGTRPYQQINGLEDAWFFLETLVHPDPNYRMQRATTFTGTWKGSVSVRIMENGTWGVWQQAHGALGQLVNAISNRGAIRVQGAASGESGSLISGAITGGSFTDWRSRPTGVLVEHTGLDSASSVFKSVMWGVDWLAGMDVVGWSAGGAQLNMYCRGAEFRFDSAGNAVGGNWVSSSDIRMKANLKEIENARDKVKSLVGYTYYKRNTLAEERDTVYSTEAGVIAQDVQSVLPEAVYKIEPQKEDSMLGVSHAGVNALLVNAFNELNEVVEKQQQEIDELKKLVKQLLDK
Physico‐chemical
properties
protein length:690 AA
molecular weight: 73699,36230 Da
isoelectric point:5,54268
aromaticity:0,08551
hydropathy:-0,28072

Domains

Domains [InterPro]
DC_0195
STR
2–690
DC_0195
IPR030392
CHP
577–637
IPR030392 Coil
IPR030392
CHP
577–677
IPR030392
ASD50268.1
1 690
Architecture
STR
STR 2-690
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SSP1
[NCBI] 		1983588 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus SSP1
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASD50268.1 [NCBI]
Genbank nucleotide accession
KY963424.1 [NCBI]
CDS location
range 57243 -> 59315
strand +
CDS
ATGCCTAAATCTGGCGCAATGGCGCCTTACGTAGTAGTTAACAGAGACGCTGCAGTTGCTGGTGTTTTCTCTGTCGATGGAGAGGCTGGTGCTGTTGTACTAACTTCCAAATATCTACAAATTACAAAATATACTACTGATAAAGCTGCTACTGATGCATCTATTAATAGTATTAATGAATCAATTGGTAATATTAATACTGCATTAGGTGGTATTAATACTACTTTAGGTACTAAAGCTGCTAAAGGTGCTAATAACGATATTACAGAATTAAATGCACTGACTAAAGCTATTACTATTGCTCAGGGTGGTACTGGTGCTACTACGTTAGAGGGTGCTAAGAAGGCCTTACAAGTTGAGCGCCTTCGCCAACAGAGTAATGGAACTTTTATTGTATCTCCTAATGAGAAATATTCTTTATTTATATATGATAGTGGAGATTTTGGTCTACTTGATAATTCTACCGCAGCAGTACAAGCATTAAAAGTTGCATTTGGTGGTACTGGAGGAACTACTCCAAAAGCAGCAAGAAAAAATCTTAATGTTCCGGTTGGCGCCTCGGCTGAAAAAATTGCTGATGGGGAAGATGTTCTAAACTATATTGCGGTTGCAGGTCAAAGTGGATACTATTCATCTGGTGAATTAATAGTTAATGGGCCTCCTAAGCAAGAAGGTTGGTGGGCCTATAACTTCCACTGTCATGGTGTGGATATTAACGGAGCTGCTCAGTATGGTACACTAAAAGCTACAGGAGCACTTGGAAGTACTTGGATCAATATTCTAGATGGTACAGACAACTGGAGAGGATGGAAAGAGCAATTTAATACCCAGTCTATCATACAGTTTTCAAATGGGGGTACTGGTGCTACTTCTAAAGATGGTGCAAGAACTAACCTGGATATTGACAGATTCAAACAAAGTGCTACTGAGACTATGGTATATGCTCCCGGAAGTGGATTTAGAATCACTGCTAGGCCTAATGGGGAATGGGGTACATGGAGAGATGATACCGGTACTTGGGTTCCTTTGGCTATTACAGCCGGGGGTACAGGAGCTAATTCTGCCGACCAAGCTAGAAAAAATCTAGAGTTAACAGAGTGGAACCTCTTATCCTCTATGGATGGTAAATACCCTAATGGGTTTAATTTTGACACTCTTGCTGTAAATAGTAAGTTTACTGTTCCACCTACTGGAGGAAATATTGTTGGTACCCGACCATACCAACAAATAAACGGGTTGGAAGACGCTTGGTTTTTCCTAGAGACTCTAGTACACCCAGATCCTAACTATAGAATGCAAAGAGCCACCACGTTTACAGGAACTTGGAAAGGTTCAGTAAGCGTACGTATTATGGAGAATGGTACTTGGGGTGTATGGCAACAAGCTCATGGGGCTTTGGGGCAATTAGTTAATGCAATCTCTAACCGAGGTGCCATTAGAGTACAGGGGGCTGCAAGTGGGGAATCTGGGTCACTAATAAGTGGTGCTATTACTGGTGGTTCATTTACTGATTGGAGATCAAGACCTACAGGAGTACTAGTAGAACATACTGGATTGGATTCTGCATCTTCTGTATTTAAAAGCGTAATGTGGGGTGTAGACTGGTTAGCCGGTATGGATGTAGTAGGCTGGAGTGCCGGCGGTGCACAGTTAAACATGTATTGCAGGGGGGCTGAGTTTCGTTTTGATAGCGCTGGTAATGCTGTTGGTGGTAACTGGGTAAGCAGTTCTGATATTCGCATGAAAGCCAATCTTAAGGAAATTGAGAATGCTCGTGATAAGGTTAAGTCTCTAGTAGGCTATACATACTACAAGAGAAATACTCTAGCAGAAGAAAGAGATACCGTGTACAGTACTGAGGCTGGTGTTATCGCTCAAGATGTGCAATCTGTTCTCCCAGAAGCAGTGTACAAGATTGAGCCACAAAAAGAAGACAGTATGCTTGGTGTCTCCCATGCAGGTGTCAATGCTCTTCTAGTTAATGCTTTTAATGAACTTAACGAAGTTGTTGAAAAGCAGCAACAAGAGATTGATGAGCTTAAGAAACTGGTAAAACAGTTACTTGATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fcb1947925e1dcf447958060467e0d4990e4a6b8d531f420479c4af6f9e7f2ba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7396
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Shigella bacteriophage SSP1 Kim,M., Ryu,S. and Kim,M. 2013-12 — GenBank