Protein

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Genbank accession
YP_010748158.1 [GenBank]
Protein name
tailspike
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGPLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVVAPFMESVTTPWVIKPWTDDNQWIIDPAAIVATLKQSKTDGYQPTVNDYVKFPGIESLLPPEAKDQNISSVLEIRECTGVEIHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGFGMDGKGLYVSNITVEDCAGLGAYLLTHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGIRPTSGSGMMIDAPNSTVSGITGFVDPSRINVADLMDVGLGNTMINSFNSDSAALRLRIHKLSKTLDSGSVYSHINGGPGSGSAWTEVTAISGSLPDAVSMKINRGDYRAVEIPVAVTVLPDAAVRDNGSISLYLDGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72985,10230 Da
isoelectric point:4,95775
aromaticity:0,08772
hydropathy:-0,12339

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
71–132
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
YP_010748158.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010748158.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9918
Central domain 156 593 439 0,9868
C-terminal 594 684 90 0,8368
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-593
C-terminal
594-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GRNsp50
[NCBI] 		2959430 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus GRNsp50
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010748158.1 [NCBI]
Genbank nucleotide accession
NC_073209 [NCBI]
CDS location
range 54 -> 2108
strand -
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGTAAACAAGGCGGTGTAGCTGGTGGTGCGGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCGGCATCTTTTAACTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCCCCCTGCCGAAAGTTATACCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCTGTTGATAGTGTTCTTATCGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAATTTTGGCGGTAAGACCCTAACCATCGACTGTAAAGCGAAGTTTATCGGCGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATCGTAGTAGCCCCCTTTATGGAAAGCGTCACAACTCCGTGGGTGATAAAACCGTGGACAGATGATAATCAGTGGATAATTGATCCCGCTGCGATTGTGGCAACACTGAAACAGTCTAAAACAGATGGATACCAGCCGACAGTAAACGATTATGTCAAGTTTCCGGGTATAGAATCACTCCTCCCACCGGAAGCTAAAGACCAAAACATTTCGTCTGTCCTTGAGATACGGGAATGCACGGGCGTTGAGATTCATCGGGCTAGCGGTCTTATGGCGTGCTTCCTGTTCCGCGGGTGCCATTTCTGTAAGATGGTAGACGCCGACAACCCGAGCGGCGGGAAGGACGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGTAAGGGTAACTATGTCATTGGTGGTCGAACCAGTTATGGGTCAGTAAGCAGCGCCCAGTTTTTACGTAATAATGGTGGATTTGAGCGCGACGGCGGGGTCATCGGGTTTACCTCGTATCGCGCCGGCGAAAGTGGTGTTAAAACATGGCAAGGTACTGTGGGTTCGACAACCTCTCGCAACTATAATCTGCAATTCCGTGATTCCGCGGTTTTATACCCAGTATGGGATGGCTTCGATTTAGGTGCGGATACCGACATGAATCCGGAAGATGACCGCCCGGGGGATTTCCCATATTCTCAATACCCGGTACATATGCTCCCTCTAAACCATTTGATCGACAATCTACTGGTCAGGGGTTCTTTGGGGGTAGGTTTCGGCATGGATGGGAAAGGTCTGTATGTCTCAAATATAACAGTAGAGGACTGTGCAGGTTTGGGTGCATATCTTCTTACGCACGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAGGATTTTCCAGCGAACCAGATATACATTTCCGGGGCATGCCGTGTGAACGGCCTTCGTTTGGTGGGCATACGCCCCACTAGTGGGTCGGGAATGATGATAGACGCTCCTAACTCCACTGTGAGCGGTATAACCGGTTTCGTCGACCCATCAAGAATCAATGTGGCTGATTTAATGGATGTAGGCCTTGGTAACACAATGATTAACAGCTTTAATAGTGATTCTGCGGCGTTGCGGCTACGGATACATAAACTGTCAAAGACTCTTGATAGCGGTTCAGTGTATTCCCACATAAACGGTGGCCCTGGTTCTGGTTCCGCGTGGACAGAAGTCACGGCTATTTCCGGGTCACTACCGGATGCCGTGTCGATGAAAATCAATAGAGGCGACTACCGTGCGGTTGAAATACCTGTAGCAGTAACAGTTTTACCTGATGCCGCTGTTCGAGATAACGGGTCTATATCCCTGTATCTGGATGGGGATAGCCTTAAGGCATTGGTTAAGCGGGCGGACGGAAGTTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d24c892d1f96cf04e61bcf6976a73ace1dd8f6ba3d3051ba4794d10e207d025b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6823
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three novel Salmonella bacteriophage and their application in different food matrices Li,Y., Lv,P., Shi,D., Zhao,H., Yuan,X., Jin,X. and Wang,X. 2018-09 — GenBank