Protein

View in Explore
Genbank accession
AGK86538.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MTAVSQRIPNFLGGVSQQADEKLFPGQVKDALNCYPDTTLGMIKRPGGKFLSKLAGVTAQSKDTDAWLTVFRDDNTKYIVSITKSTGIVRVWDIATGVEQTVTDTAGVRSYLTASDYRSLKWLTINDFTYLLNTEKVVATQAAPAWTAKKTATIVVSSVEYDTKYKVTIGSTTYTYTSRTNYVTGTPPPQVLPLELSEIVNGISGVIPAGSYATKEIIDNTIYLTFSSGTDVKGEAGPDGKYIRVIQDSVDTFNRLPEQAKHDQVVKIANTSADKDDFYLKFVAENGTSGKGYWEETRAPNVSPGLDATTMPVALLRSANGTFQVAPLDGSVTINSLAIQWEPRLVGDDESNEHPSFVGQTIQDIFLFNNRLGFLTADNVSMSQAGDYYNFYHKTATTQVISDPIDLSCASIRPALLTAVVPIAQGLLLFSESQQFLMEAENGAWTPVNVTIRTISNYECDRHITPADLGSTVMFVSRNQSWARTFEIFTRGQREAPTVTEASKIVPEWIPNSITTAVGSAQNGLWVGSSRSLPDIYMFRYYEEGDERKMASWVRWRLHSNVIFAAIQEDVLYVITSGTEGYNVLSHKLVLSPSTGGLTNYFGNTVDPYMDAWFEITTTPTVVNGSTKVYIPSHFDTAKTMQYVVGLLKVNPTNLRESGLTNIVTVQSDGGGSYFLIPGDVTANYIYLGYQYQMELTLPRYNYSVGEQGYDFTGYTTTARMKFYTGLGGAVNFNLKDNTRAEWTDVSGIRIADVYPADTSPFRDSFIYKVPVYQRPDNYTMKVQSNNPFPVSLVAMQWEGQYSPGFYRKA
Physico‐chemical
properties
protein length:810 AA
molecular weight: 89633,61690 Da
isoelectric point:5,21341
aromaticity:0,11358
hydropathy:-0,22963

Domains

Domains [InterPro]
IPR058003
TTP
1–804
IPR058003
AGK86538.1
1 810
Architecture
TTP
TTP 1-804 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGK86538.1
1 810
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9899
Central domain 144 342 200 0,3699
C-terminal 343 810 467 0,2499
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-810

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBP1
[NCBI] 		1273711 Uroviricota > Caudoviricetes > Autographivirales > Angmobvirus > Angmobvirus SCBP1
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGK86538.1 [NCBI]
Genbank nucleotide accession
KC310802 [NCBI]
CDS location
range 23010 -> 25442
strand +
CDS
ATGACAGCAGTATCGCAAAGGATCCCTAACTTCCTTGGAGGTGTATCACAACAAGCAGATGAGAAGCTCTTTCCAGGTCAGGTAAAGGATGCTTTGAACTGCTATCCAGACACTACTCTTGGTATGATTAAAAGGCCAGGAGGTAAGTTCTTAAGTAAGCTTGCAGGTGTAACTGCACAATCTAAAGACACAGATGCTTGGCTGACTGTCTTTAGAGATGACAACACAAAGTACATCGTTTCTATCACTAAGTCTACTGGTATTGTCCGTGTATGGGACATCGCTACTGGTGTAGAGCAGACCGTCACTGACACAGCTGGTGTTCGCTCTTACCTCACTGCTAGTGACTACCGTAGTCTGAAGTGGTTGACCATCAATGACTTTACCTATCTACTGAATACAGAAAAAGTTGTTGCTACACAAGCTGCTCCTGCTTGGACAGCTAAGAAGACAGCTACGATTGTTGTGTCTAGTGTTGAGTATGACACTAAGTATAAGGTTACCATCGGCAGTACAACCTATACCTACACCAGCCGTACTAACTATGTAACAGGTACACCTCCTCCGCAGGTGCTACCTCTTGAGTTGTCTGAGATTGTCAACGGTATCTCTGGTGTCATACCGGCTGGCTCTTACGCAACAAAGGAGATCATTGACAACACCATCTACCTTACCTTTTCTTCTGGTACTGATGTAAAAGGTGAAGCAGGTCCTGATGGTAAATACATTCGTGTCATTCAAGATTCCGTTGATACGTTCAACCGTCTACCTGAGCAGGCTAAGCATGATCAAGTAGTCAAGATTGCTAATACTTCTGCTGACAAGGATGATTTCTATCTGAAGTTTGTAGCAGAGAATGGTACATCCGGTAAGGGTTACTGGGAGGAGACACGCGCTCCAAACGTAAGCCCTGGTCTTGATGCTACCACTATGCCTGTAGCACTACTTAGGTCGGCTAACGGTACATTCCAGGTAGCACCTCTTGATGGCTCAGTAACTATTAACTCACTAGCTATCCAGTGGGAACCTCGTCTTGTAGGTGATGACGAGTCCAATGAGCATCCCAGCTTTGTTGGTCAAACCATTCAAGATATCTTCTTGTTTAACAACAGGCTTGGATTCTTGACTGCTGATAATGTCTCTATGTCACAAGCTGGAGACTACTATAACTTCTATCATAAGACTGCCACTACACAGGTCATCTCTGACCCTATTGACCTTAGTTGTGCAAGTATTCGACCTGCACTTCTAACTGCTGTGGTCCCTATTGCACAGGGCTTGCTGTTGTTCAGTGAGAGTCAACAGTTCTTGATGGAAGCAGAGAATGGTGCATGGACACCTGTCAATGTAACTATTCGGACTATCTCTAACTACGAATGTGATCGGCACATCACACCAGCTGATCTCGGTTCAACAGTCATGTTTGTTAGCCGTAACCAGAGTTGGGCGCGTACCTTTGAGATCTTTACTCGTGGTCAACGTGAAGCACCAACAGTAACTGAGGCTAGCAAGATCGTACCTGAGTGGATTCCTAATTCAATTACCACTGCTGTAGGAAGTGCCCAGAACGGCCTCTGGGTCGGCTCTAGTAGGTCTCTACCTGACATCTATATGTTCAGGTACTATGAAGAAGGAGATGAGCGTAAGATGGCTTCCTGGGTACGTTGGAGGTTACACTCCAATGTGATCTTTGCAGCTATCCAAGAGGATGTACTGTACGTCATTACCTCCGGTACTGAAGGTTATAACGTCCTATCTCATAAGTTGGTTCTATCTCCAAGTACTGGTGGTCTTACCAACTACTTTGGCAATACCGTTGACCCTTACATGGATGCATGGTTTGAAATTACAACCACTCCTACTGTCGTCAACGGGTCCACTAAGGTATACATCCCTAGTCACTTCGATACCGCTAAGACCATGCAGTATGTGGTTGGTCTTCTAAAGGTCAATCCTACTAATCTTCGTGAGTCTGGTCTTACTAATATCGTTACTGTCCAATCTGATGGTGGTGGTAGTTACTTCCTGATTCCTGGTGATGTAACTGCTAACTACATCTATCTAGGTTATCAATACCAGATGGAGCTCACCTTGCCTCGCTACAACTATTCAGTTGGTGAGCAGGGTTATGACTTTACTGGATATACAACCACAGCACGTATGAAGTTCTATACAGGTCTGGGTGGTGCAGTGAACTTTAACCTTAAAGACAACACTCGTGCTGAGTGGACTGATGTATCTGGCATCCGTATTGCAGATGTCTACCCTGCTGATACCTCACCATTTAGAGACTCCTTCATCTACAAAGTTCCTGTATACCAAAGACCTGACAACTATACGATGAAAGTTCAATCTAATAATCCATTCCCCGTCAGTCTTGTGGCTATGCAATGGGAAGGACAATACTCACCCGGTTTCTATAGGAAGGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c12c0cdbfc55d803b103bea258cfe65423ee41905b352c2fe951b6a6bae50017
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8632
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative Genomic and Phylogenomic Analyses Reveal a Conserved Core Genome Shared by Estuarine and Oceanic Cyanopodoviruses Huang,S., Zhang,S., Jiao,N. and Chen,F. 2015 26569403 GenBank