Protein

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Genbank accession
QBX30536.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 0,84
Protein sequence
MNNDTITINGFDLSEVIRIIEIIRPVGNERSIETNDAPLLGVNLQEVRTGAKFIKVKFAMQERDGMTLEQAKHTLAGVFNTSEAVKIVISDEPDKYYIGLVTGSVDMDNVTRWFQKGEFELLIPDGVAHSITYRVFDNGTVSSDKIVFNLINDGNVPAFPVVTIKHNAENGYIGLVNTSGALEVGDREEADTVSVKQSEMLLDFRDSKIGNALTSGTPNIGIMNDQNANPVFSGSIRKVNVWGRDHLELNGRGFSSLTWDIPNDSAGGVGSLNDYLWWRQIFWLGATNQYGAMKITVSDTNGQFLYGVETFKRSKGLDCEYNFMTTDGKGGYNMIKQWRFTGTHWDYHNPFNEPRGWSDLKRNDDKVTVYWFGTYNEFYIPEIKGKKSKKIHIAFSSIGNHPIVSHMYLDSFYYRKDHVNVAKDIPNRYPIGSNIVLNSEDDTVTVDGLERIVDIVHGSTFLTIPPGRSTLEVYSSSWVRTKPTVKIAFEERYL
Physico‐chemical
properties
protein length:494 AA
molecular weight: 55642,90790 Da
isoelectric point:5,55456
aromaticity:0,10931
hydropathy:-0,35709

Domains

Domains [InterPro]
DC_0420
STR
1–494
DC_0420
G3DSA:2.40.30.200
ATT
2–129
G3DSA:2.40.30.200
IPR006520
Unmapped
9–129
IPR006520
IPR008841
STR
32–122
IPR008841
QBX30536.1
1 494
Architecture
ATT
STR
ATT 1-129 | STR 130-494
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX30536.1
1 494
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9716
Central domain 198 400 204 0,2711
C-terminal 401 494 93 0,5121
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-400
C-terminal
401-494

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan554
[NCBI] 		2548256 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus suis 89-3576-3
[NCBI] 		1214171 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus suis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX30536.1 [NCBI]
Genbank nucleotide accession
MK448982 [NCBI]
CDS location
range 28436 -> 29920
strand +
CDS
ATGAACAATGACACAATCACTATCAACGGATTTGACCTCTCTGAGGTTATCCGAATTATTGAAATTATCCGCCCTGTTGGCAATGAGCGTAGCATTGAAACTAATGACGCTCCACTCTTGGGAGTGAACTTGCAAGAAGTAAGAACAGGGGCTAAGTTTATCAAGGTCAAGTTTGCCATGCAAGAAAGAGATGGCATGACACTTGAACAAGCTAAACACACTTTGGCAGGGGTATTCAATACCTCTGAGGCTGTCAAGATTGTTATCTCTGATGAGCCTGATAAGTATTATATAGGACTTGTTACAGGCTCTGTGGACATGGATAATGTGACAAGATGGTTCCAAAAGGGTGAGTTTGAGCTGCTTATTCCAGATGGAGTAGCTCACAGCATCACTTACCGTGTTTTCGATAATGGCACAGTATCATCTGACAAGATTGTTTTCAATCTGATCAATGATGGCAACGTGCCAGCTTTCCCTGTGGTTACTATCAAGCATAACGCTGAAAATGGCTACATTGGTTTGGTCAATACCAGCGGTGCTCTTGAGGTTGGTGACCGTGAGGAAGCTGACACTGTATCTGTTAAGCAGTCTGAGATGCTACTGGACTTTAGAGATTCAAAAATTGGCAATGCTTTAACTTCTGGTACTCCTAACATCGGAATTATGAATGACCAAAATGCAAATCCTGTTTTTAGTGGTAGTATCCGAAAGGTTAACGTTTGGGGGCGTGACCATCTGGAACTAAACGGTCGTGGTTTTAGTTCTCTTACCTGGGATATTCCAAACGATAGTGCTGGTGGCGTTGGGTCTCTCAATGATTACTTGTGGTGGAGACAAATCTTTTGGCTTGGCGCTACAAATCAGTACGGAGCTATGAAAATTACGGTATCGGATACCAACGGTCAATTTTTATACGGTGTAGAAACGTTTAAGAGAAGTAAAGGGCTTGATTGTGAATATAATTTTATGACTACTGATGGAAAAGGTGGCTACAACATGATTAAGCAGTGGCGTTTTACAGGTACTCATTGGGATTATCATAATCCTTTTAATGAGCCTCGCGGCTGGTCTGATTTAAAGAGAAACGATGACAAGGTAACGGTCTATTGGTTTGGTACCTATAACGAGTTTTACATTCCTGAGATTAAAGGGAAAAAGTCTAAGAAAATCCATATTGCTTTCTCATCAATTGGAAACCATCCGATTGTATCACACATGTATTTGGATAGTTTCTACTACCGTAAGGATCATGTTAACGTCGCTAAAGATATTCCTAACCGCTACCCAATTGGCTCCAACATCGTTTTAAATAGCGAGGATGACACGGTAACAGTAGATGGTCTAGAGCGTATTGTGGATATTGTCCACGGTTCTACGTTTCTTACTATTCCACCTGGTAGGTCTACTCTTGAGGTCTATTCCTCAAGTTGGGTCAGGACAAAGCCCACAGTCAAGATAGCATTTGAAGAAAGGTACTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
986dcbd85170b426d841c5f118b00b21a9ae2984a1769983cc193c5853140566
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9124
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank