Protein

View in Explore
Genbank accession
QGH71327.1 [GenBank]
Protein name
tail fiber protein 2
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MAYQTKEHIVTERVNDKDIDFNLIFASAAPSVRELEEAQYLKGWSFLGDEIPPEFEDFDSVMRLQDRKIQILKQASDGVDDKIAAVSQKVDDGIDGVNQKVDEEIAALDKKIEKSGGGYVTQVMWHSTRKHLPAGCLLSDGQEVDRATWPSLFEEIEAGRVPVVPEADWLANPKLRGSYTLGDGVNTFRVPDYNGRSVGSLGRIFLGGDGQNAGLEGQIQESANKRHNHAITDNGHSHGVNDAGHSHEKSAWVANPAGGGQIYRDPEVWITTNAADKVEVHYKTGVSTSGISLQESESGITLAEDGEADARPSNVAGCYIIRGAGEKMNEGSVDALQLATLVNQLAAKVASLEEQGNAGYVGKVDWHPLRESVPHGRIPADGQLLSRELYPALWEYVRDRKVPVTTEELWNSDVKRRGCYTEGDGSTNFRVPDYNGKTSGSLGAGFLRGDGLNSLSESGLIQGDAIRNITGYAGAVANYKALASSGALSLDADQGPMYVNGANTGVWAALRNMSIDVSKAVPTAADNHPVNVTGCFVIQYAGAVINSGYVDAVKAIEQISKLDSRVGALESKPQLFEIMYPYGTPDTPATLGTNQRLVFHPPAKFNGRTIQCKLQLRYNGFWHDWSTFIYDSNGSASSSTGAMAGVVNNGGSATDTTPTYIVIQTAKDALGTESRFDGNIAGLSGWLTEAHYRVLIWSVD
Physico‐chemical
properties
protein length:700 AA
molecular weight: 75474,86010 Da
isoelectric point:5,05818
aromaticity:0,07857
hydropathy:-0,37686

Domains

Domains [InterPro]
SSF88874
STR
130–322
SSF88874 Coil SSF88874 DC_0781
DC_2049
STR
208–440
DC_2049 DC_1811
QGH71327.1
1 700
Architecture
STR
RBD
STR 130-570 | RBD 571-700
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGH71327.1
1 700
Domain Start End Length (AA) Confidence
N-terminal 1 571 571 0,6737
Central domain 572 689 119 0,0469
C-terminal 690 700 10 0,9931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-571
Central
572-689
C-terminal
690-700

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_Yen_X1
[NCBI] 		2663327 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGH71327.1 [NCBI]
Genbank nucleotide accession
MN617773.1 [NCBI]
CDS location
range 33957 -> 36059
strand -
CDS
ATGGCCTATCAAACCAAGGAGCATATTGTGACAGAAAGAGTTAACGACAAAGACATAGATTTCAATCTGATTTTCGCGAGCGCAGCGCCAAGCGTTCGCGAACTTGAGGAGGCGCAATATCTGAAAGGGTGGTCTTTCTTGGGGGACGAGATCCCCCCTGAATTTGAGGATTTCGATTCTGTGATGCGCCTGCAAGATAGAAAGATCCAGATTCTAAAACAGGCGTCCGATGGCGTAGATGATAAAATCGCAGCCGTAAGCCAAAAGGTTGACGACGGAATAGATGGCGTAAACCAAAAGGTTGACGAGGAGATCGCGGCGCTCGACAAGAAGATAGAGAAATCAGGCGGCGGCTACGTGACGCAAGTTATGTGGCATTCAACACGGAAGCACTTACCGGCTGGTTGCTTACTGTCTGACGGGCAAGAGGTAGACCGTGCAACTTGGCCTAGCCTGTTCGAGGAAATAGAAGCTGGACGCGTTCCGGTTGTTCCGGAGGCTGATTGGTTGGCTAACCCGAAATTACGCGGTAGCTACACGTTAGGCGACGGGGTTAATACTTTCCGTGTTCCGGATTATAACGGGCGCTCGGTTGGCTCACTTGGTCGAATCTTCTTGGGCGGTGACGGTCAAAATGCAGGGCTTGAGGGTCAGATCCAAGAGTCGGCAAATAAGCGACACAATCACGCGATAACCGACAACGGACACAGCCACGGAGTGAATGACGCAGGTCATAGTCATGAAAAATCTGCTTGGGTAGCCAACCCAGCTGGCGGCGGTCAAATATACAGAGATCCGGAAGTATGGATTACAACCAACGCAGCGGATAAAGTGGAGGTTCATTACAAAACCGGAGTATCCACAAGCGGAATCTCATTGCAGGAAAGCGAAAGCGGCATAACGTTAGCGGAAGATGGAGAGGCCGACGCGCGTCCGTCAAACGTGGCAGGCTGCTACATTATTCGCGGCGCTGGCGAGAAAATGAATGAGGGTTCAGTGGATGCTCTGCAACTGGCAACTCTTGTAAACCAACTAGCCGCTAAGGTGGCAAGTCTGGAGGAGCAAGGAAACGCCGGTTATGTTGGAAAGGTTGATTGGCACCCATTACGCGAAAGCGTGCCGCATGGCAGAATTCCGGCAGACGGGCAACTGTTGAGCCGCGAACTGTATCCGGCATTGTGGGAATATGTAAGAGATAGAAAGGTTCCGGTAACAACTGAGGAGCTATGGAATTCTGACGTAAAACGACGTGGTTGTTATACCGAGGGTGACGGCTCCACAAACTTCCGCGTTCCGGACTATAACGGTAAAACTTCCGGATCTCTTGGTGCTGGGTTCTTGCGCGGTGACGGGCTGAATTCGCTTAGCGAAAGCGGCCTGATTCAGGGTGACGCGATCAGAAACATTACCGGTTACGCTGGCGCTGTTGCGAACTATAAAGCTCTCGCGAGTAGTGGGGCATTGTCTCTTGATGCTGATCAAGGCCCAATGTATGTAAATGGGGCGAATACTGGAGTTTGGGCAGCACTGCGAAATATGTCGATTGATGTATCCAAGGCTGTTCCAACGGCGGCAGACAACCATCCGGTAAACGTGACAGGTTGCTTTGTCATCCAGTATGCGGGTGCTGTAATTAATTCCGGTTACGTGGATGCCGTGAAAGCGATTGAGCAGATATCAAAACTGGATAGCAGGGTTGGCGCTCTTGAGTCTAAGCCGCAACTGTTTGAGATTATGTACCCGTATGGCACCCCTGATACTCCGGCGACACTTGGTACAAACCAGAGATTGGTTTTCCATCCACCTGCCAAATTTAACGGGCGCACAATACAATGCAAATTGCAATTGAGGTACAACGGATTTTGGCATGACTGGAGCACTTTTATTTATGATTCAAACGGTAGTGCGTCTTCATCTACCGGAGCAATGGCTGGTGTTGTGAATAATGGCGGCTCAGCAACAGACACAACACCTACTTACATCGTGATTCAAACAGCAAAGGACGCGCTAGGAACGGAGTCAAGATTTGATGGTAATATTGCTGGATTAAGCGGCTGGCTAACCGAGGCGCACTATAGGGTGCTAATTTGGAGTGTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7e4b570dbdb8f3f9609b6b80be088ba577e35428cbc54e92e9ad26368aa64ad6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7086
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage vB_Yen_X1 administered orally efficiently protects a murine chronic enteritis model against Yersinia enterocolitica infection Xue,Y. 2020-03-06 — GenBank