Protein

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Genbank accession
XYS96433.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,59
Protein sequence
MPTINVLVAPYVVRNKPETERGHVVTGVAKGWQKTSLNQDPDEILTECKGLDELLTKSNLEADGVTKIDPSKPVGFLVSYEIHDPSAVLTTGLTITPATANGEIGQVVELLATVAPANATYKGVNWYSGDVTKAVHIGGGKFKLLQSGSVTVYGVTVEGNHVDSTVITVAGALSLSTDLTATKDVTGGEDATFSVVAAGGTTPYTYAWYFSDVPGGAGSVIDAGTNATASTANLVVTAVDAADEGEYWCVVSDADGHSVTSTRCEMAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27784,68250 Da
isoelectric point:4,49917
aromaticity:0,06320
hydropathy:0,08104

Domains

Domains [InterPro]
DC_0400
STR
2–269
DC_0400
G3DSA:2.60.40.1080
STR
86–170
G3DSA:2.60.40.1080 IPR013783
IPR007110
STR
164–260
IPR007110
IPR003599
STR
180–269
IPR003599
PF13927
STR
183–252
PF13927
IPR036179
RBD
185–262
IPR036179
XYS96433.1
1 269
Architecture
STR
STR 2-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYS96433.1
1 269
Domain Start End Length (AA) Confidence
N-terminal 1 209 209 0,6442
Central domain 210 258 50 0,3879
C-terminal 259 269 10 0,9843
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-209
Central
210-258
C-terminal
259-269

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage HMGUkp5
[NCBI] 		3434166 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella sp.
[NCBI] 		576 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYS96433.1 [NCBI]
Genbank nucleotide accession
PV683293 [NCBI]
CDS location
range 64259 -> 65068
strand -
CDS
ATGCCAACAATCAATGTATTAGTCGCGCCGTATGTTGTACGCAACAAACCGGAGACCGAACGTGGTCATGTTGTTACCGGGGTTGCCAAGGGCTGGCAGAAAACCAGTCTGAACCAAGACCCGGACGAAATTCTGACCGAATGTAAAGGTCTTGATGAACTGCTGACCAAGTCTAATCTGGAAGCAGACGGCGTGACCAAAATCGATCCTTCGAAGCCCGTCGGCTTCCTGGTATCTTACGAAATTCATGATCCCAGCGCAGTCCTGACTACTGGCCTGACTATCACCCCGGCAACCGCCAATGGTGAAATTGGGCAGGTGGTTGAACTTCTGGCGACGGTGGCCCCGGCGAATGCGACCTATAAAGGCGTCAACTGGTATTCCGGTGACGTGACTAAAGCGGTCCATATCGGCGGCGGTAAATTCAAACTGCTTCAGTCCGGTTCCGTTACCGTCTATGGCGTCACCGTAGAAGGCAACCATGTCGATTCAACCGTCATCACTGTTGCGGGCGCTTTGTCTCTTTCAACCGATCTGACGGCAACTAAAGACGTGACAGGTGGTGAAGACGCGACATTTAGCGTTGTCGCTGCGGGCGGCACTACCCCGTACACTTATGCGTGGTATTTCTCTGATGTGCCGGGCGGCGCAGGTTCGGTTATTGACGCTGGCACCAACGCGACTGCATCAACCGCTAACCTGGTTGTGACTGCTGTGGATGCTGCCGACGAAGGCGAATATTGGTGTGTTGTTTCTGACGCCGATGGTCATTCAGTGACTTCTACCCGTTGCGAAATGGCTGTAGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fe618e237fb2d328e88b7a1835a3c2d494f13e1b5aa7b6ccfe9b3bd1ea83f6a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8095
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50