Protein

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Genbank accession
YP_010672646.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MSSRGQFIGSGADAGIYQPRPVPAESDQLATYINDELLQLGGRFNEVLEGGAFPPSSEMPQRWKDGQMVYFTKALDDTYPNGPYKGQKIVPSPGVYLYKDGREVGDPEPEDGSVEGRWWKIIDDPSSIQTQRFVYQFGNETTPETPPRGPGNPPTGWELSPPKKDNKGQYIWASEQLSVTEDLIYEWGDPIIWSGGVADGGEGVGTEQRFIAWPEGPAPTFSNPNDRYPRTPGGELYTLTIPPVDPPDSVYVYVTSGRIGAETDLLKSPWSNPVPYSTPDTTTIHRVWATGEEWGDPYPSFDPNGNPTPGNGWTDSVPPLSNDYPQWVSDRLEWRGNGAPQTVWTTPTYWNAQKGDKGDVGLPGGTGTAWITINGTQWGDLTATNTIVNTFGRDPIVWDVVTVKDVNSDYSEAKRWDGSAWIYDPNIIDGSLVVDGTIIGSAIKASTQIRIGGADAGGNPNYMVVLDGNPSEPYLMFAGHPDGSLANFTIDKNGNMNAKNAIFNGNITTGSTITGGTINGGQITSSNGNFTVDTAGNMTCQNATINGDLIGDIGNGGNARLIGSEVHVPTQIAKPTGNFTGFHVYSDGSTYIGSDAIIQGSVYAERIVGDITSAVLKSNDAFKQGYLAAGVWRTMREIVTVEHNRPYDRHLKIGVTERPQGFCISCDSQGYGDQFFYARLINIDTGYVAWEKSFNVNLQRFFTVDILTIITSVPSNTGAGTYELQVKCNRNIDGIQYMYDAYSADTSGAVQTLLEAVLFKDSGELS
Physico‐chemical
properties
protein length:766 AA
molecular weight: 83110,66360 Da
isoelectric point:4,46910
aromaticity:0,10574
hydropathy:-0,46410

Domains

Domains [InterPro]
DC_0392
STR
2–205
DC_0392 IPR057549
DC_1333
STR
196–760
DC_1333
YP_010672646.1
1 766
Architecture
STR
STR 2-760 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010672646.1
1 766
Domain Start End Length (AA) Confidence
N-terminal 1 541 541 0,9175
Central domain 542 740 200 0,2172
C-terminal 741 766 25 0,9976
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-541
Central
542-740
C-terminal
741-766

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vp_R1
[NCBI] 		2059867 Uroviricota > Caudoviricetes > Grimontviridae > Dalianvirus R1 >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010672646.1 [NCBI]
Genbank nucleotide accession
NC_070978.1 [NCBI]
CDS location
range 86731 -> 89031
strand +
CDS
ATGAGTTCTCGTGGTCAGTTTATAGGTTCAGGTGCAGATGCAGGTATTTACCAGCCTCGACCAGTACCAGCTGAATCTGACCAATTGGCTACTTACATCAATGACGAACTTCTGCAATTAGGTGGACGTTTTAATGAGGTCCTGGAGGGAGGGGCTTTCCCTCCTTCTAGTGAAATGCCTCAGAGATGGAAAGATGGTCAAATGGTTTATTTCACAAAAGCCTTAGATGACACTTATCCGAATGGCCCATACAAGGGTCAAAAGATTGTACCATCACCAGGTGTTTATTTGTACAAAGACGGAAGAGAGGTAGGTGACCCAGAGCCGGAGGACGGTTCAGTTGAGGGGCGTTGGTGGAAGATAATCGATGACCCTTCATCTATTCAGACTCAAAGGTTTGTTTACCAGTTTGGTAATGAAACTACTCCAGAAACCCCACCTAGAGGTCCTGGAAATCCACCAACTGGATGGGAACTGTCTCCTCCTAAGAAAGATAACAAAGGACAATACATTTGGGCTTCTGAGCAACTATCTGTTACAGAAGATCTTATTTATGAATGGGGTGACCCAATTATTTGGTCTGGTGGTGTTGCTGACGGTGGGGAAGGTGTTGGGACAGAGCAAAGATTCATAGCTTGGCCTGAAGGCCCTGCTCCTACGTTCAGTAACCCTAATGACAGATACCCAAGAACCCCAGGCGGTGAATTATACACTCTCACAATACCTCCTGTAGACCCACCTGACTCAGTATATGTCTATGTTACTAGTGGCAGAATTGGTGCTGAGACAGATTTACTTAAAAGCCCATGGTCAAACCCAGTACCATACTCTACACCAGATACAACTACAATACATAGGGTATGGGCTACAGGTGAAGAGTGGGGTGATCCTTACCCTTCTTTTGATCCTAATGGAAACCCTACTCCTGGTAATGGGTGGACTGACAGTGTACCACCATTAAGCAATGATTATCCTCAGTGGGTATCTGACAGACTTGAATGGAGAGGTAACGGGGCTCCGCAAACAGTGTGGACAACACCAACTTACTGGAATGCTCAGAAAGGTGACAAGGGTGATGTAGGTCTTCCTGGTGGAACAGGTACTGCTTGGATTACAATAAATGGTACCCAATGGGGAGACCTGACAGCAACTAACACAATTGTTAACACTTTTGGAAGAGATCCTATTGTTTGGGATGTTGTTACTGTAAAAGATGTAAACAGCGATTATAGTGAAGCAAAAAGATGGGATGGTTCTGCTTGGATATATGACCCCAATATTATTGATGGCTCATTAGTTGTTGATGGTACAATCATAGGAAGTGCCATAAAGGCCAGTACTCAGATTAGGATTGGTGGAGCTGATGCAGGTGGTAACCCTAACTACATGGTTGTACTTGATGGTAACCCTTCTGAACCATACTTAATGTTTGCTGGCCACCCTGATGGAAGCTTAGCTAATTTTACTATTGACAAGAACGGTAACATGAATGCCAAGAATGCTATCTTCAATGGTAATATCACTACAGGGTCTACTATCACTGGTGGTACTATCAATGGTGGACAAATAACATCTAGTAATGGTAACTTTACAGTAGATACTGCTGGTAACATGACTTGTCAGAACGCAACTATCAATGGTGACTTGATAGGTGATATTGGTAACGGTGGTAATGCTAGACTTATAGGTTCTGAGGTGCATGTACCTACTCAGATTGCAAAACCAACTGGGAACTTTACAGGATTCCACGTATATAGTGATGGTTCAACCTACATTGGTAGTGATGCAATAATCCAAGGGTCTGTATATGCTGAGAGGATAGTTGGTGATATTACATCAGCCGTTCTTAAAAGCAATGATGCATTTAAACAGGGTTACTTAGCTGCTGGGGTTTGGAGGACTATGAGAGAAATTGTAACTGTTGAGCACAATAGACCTTATGATAGGCACTTGAAAATAGGAGTTACTGAAAGGCCTCAAGGTTTCTGTATATCTTGTGATTCACAGGGGTATGGTGACCAGTTCTTCTACGCTAGACTTATAAACATCGACACAGGGTACGTTGCTTGGGAGAAATCTTTCAATGTTAATCTTCAGAGATTTTTCACAGTTGATATTTTAACTATAATAACATCTGTACCTTCTAACACAGGGGCTGGCACTTACGAACTTCAGGTAAAATGTAACAGAAATATTGACGGAATACAATACATGTATGATGCATATTCAGCAGATACCTCTGGAGCTGTACAGACCCTATTAGAAGCTGTACTCTTTAAGGACTCTGGGGAACTGTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d152f2c04ace572dc00434a00c8a68341317ee3939ef112ff92ab0c71ab0b157
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6317
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of a novel phage Vp_R1 lytic to Vibrio parahaemolyticus Ren,H. and Li,Z. 2023-06 — GenBank