Protein

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Genbank accession
YP_009876731.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MDIQVRQHKDFNKNSIKNARIPDVNSGEEHDEDAINRKFVEEKLKVKNLSATTTVNDVGGIPAGTDIDGKTVNEILDEVFNPLIAPTYTKPTVQLSIQNLDELKQSGKQVDVVLEAIVTLNDSEGITSYTFSGSGINTPVVQAGNIFTVSNFELLEGIQSWDVNISYQGSVIKEDSHGNDDNTGIFGDANDINSDVSLDLKPPILTNISRNSGINFTSMTDVEILESVPNVLDFANKFYLEIDKDVTDINFALPLENADIAIMMDGEDISSAFDTQTVSNIKPWGVGSGFTYTVFNMNTTSVLTEAKTLEVVIFEKTFDSINDIMFSSTTNEVSINGESALVVPNGDFDVYKVGTNQIRIVSNVGFITKVEHGRPFKQTKFYSNDVTIDLGIEHSDYENITTNYKFRVWVVNSLTPTQSTKIIE
Physico‐chemical
properties
protein length:424 AA
molecular weight: 46775,46660 Da
isoelectric point:4,36929
aromaticity:0,08019
hydropathy:-0,24057

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009876731.1
1 424
Domain Start End Length (AA) Confidence
N-terminal 1 240 240 0,9498
Central domain 241 413 174 0,0908
C-terminal 414 424 10 0,5774
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-240
Central
241-413
C-terminal
414-424

Taxonomy

  Name Taxonomy ID Lineage
Phage Tenacibaculum phage pT24
[NCBI] 		1880590 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Tenacibaculum sp.
[NCBI] 		1906242 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009876731.1 [NCBI]
Genbank nucleotide accession
NC_049383 [NCBI]
CDS location
range 88013 -> 89287
strand -
CDS
ATGGATATACAAGTAAGACAACATAAAGATTTTAACAAAAATAGTATTAAAAATGCTAGGATTCCTGATGTAAATTCAGGAGAAGAGCATGATGAAGATGCTATTAATAGAAAATTTGTCGAAGAAAAACTAAAAGTAAAAAACCTTTCAGCAACAACAACAGTTAATGATGTCGGTGGTATTCCCGCAGGAACAGATATTGATGGTAAGACTGTTAATGAAATATTAGATGAGGTTTTTAACCCTCTGATTGCACCAACATACACAAAACCAACTGTTCAACTTTCTATACAAAATTTAGATGAGTTAAAACAATCAGGTAAACAAGTTGATGTTGTATTAGAAGCAATAGTTACATTAAATGATTCAGAAGGTATAACAAGTTATACATTTTCGGGTAGTGGTATAAACACACCAGTTGTTCAAGCAGGTAATATATTTACTGTTTCAAATTTTGAACTTTTAGAAGGGATTCAATCATGGGATGTTAATATAAGTTATCAAGGCTCTGTAATTAAAGAAGATTCACACGGGAATGATGATAATACTGGAATTTTTGGTGATGCGAATGATATTAATAGTGATGTATCATTAGATTTAAAACCACCAATTTTAACAAATATTTCTAGAAATAGCGGTATTAACTTTACAAGTATGACAGATGTAGAAATTCTAGAATCTGTACCGAATGTTTTGGACTTCGCTAATAAATTCTATTTGGAAATTGATAAAGATGTTACAGATATCAACTTCGCTTTACCATTAGAAAATGCAGATATTGCAATTATGATGGATGGTGAAGATATTTCAAGTGCTTTCGATACACAAACCGTTAGTAATATAAAACCTTGGGGTGTTGGTTCAGGTTTCACATATACAGTTTTTAATATGAATACAACATCTGTATTAACAGAGGCTAAAACTTTAGAGGTGGTGATATTTGAAAAAACTTTCGATTCTATAAATGATATAATGTTTTCATCAACAACAAATGAAGTTTCAATAAATGGTGAATCTGCTTTGGTTGTTCCGAATGGTGATTTCGATGTGTATAAAGTCGGAACAAATCAAATTAGGATTGTTTCAAATGTTGGTTTTATAACTAAAGTTGAACACGGAAGACCGTTCAAACAAACAAAGTTCTATTCAAATGATGTAACAATCGATTTAGGTATAGAACATTCTGATTATGAAAATATTACAACAAATTATAAATTTAGGGTTTGGGTTGTTAATTCGCTTACACCAACACAATCAACAAAAATTATAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
de211918e95626abc60b82aa8f027faff8fc728819271ee2ace9c283003d81ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5369
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of three bacteriophages infecting bacteria isolated from shrimp culture pond water Khoa,H.V. 2017-07-13 — GenBank