Protein

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Genbank accession
YP_001110804.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTAGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSILIDRDYNFNNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVVAPFMESATTPWVIKPWTDNNEWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEIHRASGLMACFLFRGCHFCRMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDINPEDGRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGLGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGIRSTSGQGMTIDAPNSTVSGITGLVDPSRINVANLAEEGLGNSRINSFNSDSAALRLRIHKLSKTLDSGSVYSRINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAMTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72772,52440 Da
isoelectric point:5,02135
aromaticity:0,08480
hydropathy:-0,16623

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
96–132
IPR040775 IPR015331
IPR012332
STR
136–684
IPR012332
IPR015331
RBD
138–684
IPR015331
YP_001110804.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001110804.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9921
Central domain 156 598 444 0,9863
C-terminal 599 684 85 0,8280
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-598
C-terminal
599-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SETP3
[NCBI] 		424944 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus SETP3
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001110804.1 [NCBI]
Genbank nucleotide accession
NC_009232 [NCBI]
CDS location
range 22397 -> 24451
strand +
CDS
ATGTCTAGTGGTTGCGGTGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGCGGTGTAGCTGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCAGCATCTTTCAACTTCACAACCGGCGGGACCCTGGGGGCTGACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCGGCGGCGTCGACACCTCTTACGGCAGGCGGCATTTCGGATTCCGCCTGGGTCGCGTTCGGGGATATCACCTTCCGTGCCGAAGCAGATAAGAAATTTAAATACTCCGTTAAGTTGTCGGATTTTACCACTTTACAGCAATTGGCCGACGCTGCCGTCGACAGTATTCTTATCGACCGTGACTACAATTTCAACAATAACGAAACCGTTAATTTTGGCGGTAAGACCCTAACCATCGACTGTAAAGCGAAGTTTATCGGCGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATCGTAGTAGCCCCCTTTATGGAGAGTGCTACAACGCCGTGGGTGATAAAACCCTGGACTGACAATAATGAGTGGATAACCGACCCCGCTGCGATTGTAGCAACACTGAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTATGCCAAGTTTCCAGGTATAGAATCACTCCTCCCTCCGGAAGCTAAAGACCAAAACATTTCATCTGTCCTTGAGATACGGGAATGTACAGGCGTCGAGATTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTGGATGCCATTTCTGTAGGATGGTAGACGCCGATAACCCCAGCGGCGGGAAGGACGGCGTAATCACCTTCGAAAATTTAAGCGGCGATTGGGGTAAGGGGAACTATGTTATTGGTGGCCGCACGAGTTACGGCTCAGTAAGTAGCGCGCAATTTTTACGTAACAATGGTGGTTTCGCGCGAGATGGTGGGGTCATAGGATTTACCTCGTATCGCGCGGGGGAAAGTGGTGTTAAAACATGGCAAGGTACGGTAGGTTCTACGACCTCTCGTAACTACAACCTGCAATTCCGGGATTCTGCGGTACTATACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATAAACCCAGAAGATGGCCGCCCGGGGGATTTCCCATATTCCCAATACCCGGTACATATGCTCCCTCTAAACCATTTAATTGACAATCTACTGGTTAGGGGTTCTTTGGGGGTAGGTTTAGGCATGGACGGGCAGGGCCTATATGTTTCAAATATAACTGTAGAGGATTGTGCAGGTTCGGGTGCGTATCTTCTTACTCATGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAAGATTTTCCAGCGAATCAGATATACATCTCCGGGGCCTGCCGTGTAAATGGCCTTCGTTTGGTAGGCATACGCTCCACTAGTGGGCAGGGGATGACGATAGACGCTCCTAACTCCACTGTAAGCGGTATAACAGGTCTCGTTGACCCGTCAAGAATCAATGTGGCCAATTTAGCGGAGGAAGGTCTAGGAAACTCACGAATTAATAGTTTTAATAGCGATTCTGCGGCGCTGCGGTTACGGATACATAAACTGTCAAAAACCCTTGATAGTGGGTCCGTGTACTCCCGCATTAACGGCGGGCCAGGTTCTGGTTCAGCATGGACCGAAATTACTGCTATTGCGGGGAGCTTGCCCGATGCCGTGTCATTAAAAATAAATAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGATGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b415bbc4402b3a0145f571c4c228bb3a3da2ad83172bb580f99f684d4a70a58e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6963
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of Salmonella Enteritidis Typing Phage 3 (SETP3) De Lappe,N. and Cormican,M. 2009-01-01 — GenBank