Protein

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Genbank accession
QDJ96411.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MTDYIVRRTDINVPTTTVSEDTVDETSYDVTLFGRILQNYGEGVNEDLLNLLENFSCPEDPATTGIFTATPDLLSVTKTQLNNPTIGQFWYNSSRELMYYYDGTRWNPIPNRGAYAANWGQVMNGQQLPKPVNFQGRVFDYNECIWSVSPAAINGTIDLMNCNTNASSQVTMHYRYANTEMIVPGIANYLIIGIDGNHNNGVVVPPLMPSPTPTPSPSSTPAPTQTSTPSPTPTVTATITATITPTPTLTRSPTPVPSPTPQISNTPVPSPTPVPSSTPTPAPITYCYTVSTFCMGYGDTQLVWTPLRRSSQVGTPSACYCAAGGPNSHSCSGSVIRVFTNMANTFPSVRFVVRVSASNGATTGDVELFARIPSSVSNTSSGTFNFNFNLNGVNHVMVVNANWYKSSGDNNAANGTLSANYSFNTGIGRC
Physico‐chemical
properties
protein length:430 AA
molecular weight: 46220,99910 Da
isoelectric point:5,18999
aromaticity:0,09070
hydropathy:-0,24535

Domains

Domains [InterPro]
DC_1317
STR
40–250
DC_1317
QDJ96411.1
1 430
Architecture
STR
STR 40-250 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ96411.1
1 430
Domain Start End Length (AA) Confidence
N-terminal 1 55 55 0,9776
Central domain 56 279 225 0,1320
C-terminal 280 430 150 0,9618
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-55
Central
56-279
C-terminal
280-430

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 No lineage information
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96411.1 [NCBI]
Genbank nucleotide accession
MN047793 [NCBI]
CDS location
range 135440 -> 136732
strand -
CDS
ATGACTGATTATATTGTTAGACGCACTGATATCAACGTACCTACCACGACTGTATCTGAAGATACAGTCGATGAGACCTCATACGACGTAACTTTGTTTGGTAGAATCCTACAGAATTATGGAGAAGGCGTTAATGAAGACTTGCTAAATCTGCTTGAAAATTTCTCTTGTCCCGAAGACCCTGCAACAACAGGTATTTTCACTGCTACTCCAGATTTATTAAGTGTTACAAAGACTCAGCTGAATAACCCTACCATAGGGCAATTTTGGTATAATTCATCACGAGAATTGATGTACTACTATGATGGTACTCGATGGAATCCTATACCAAATCGTGGAGCCTATGCTGCTAACTGGGGCCAAGTTATGAATGGTCAACAGTTACCGAAGCCAGTTAACTTTCAAGGTAGAGTATTTGACTATAATGAATGTATTTGGTCAGTATCTCCAGCAGCAATTAACGGCACAATCGATTTAATGAATTGTAATACTAATGCGTCATCCCAAGTGACGATGCATTATCGCTATGCCAATACAGAAATGATTGTACCCGGTATCGCAAACTACTTGATTATTGGTATTGATGGGAATCATAATAATGGTGTAGTAGTACCGCCATTAATGCCGTCACCAACCCCAACCCCATCACCTTCATCGACACCAGCACCGACACAAACGTCAACACCATCTCCGACGCCAACGGTGACGGCAACTATTACGGCAACTATTACGCCTACCCCTACACTAACTCGCAGTCCAACACCAGTACCGTCACCAACACCGCAGATTTCGAATACGCCAGTACCAAGTCCTACACCGGTACCAAGTTCAACACCGACTCCTGCACCAATTACATACTGCTATACGGTATCTACATTCTGTATGGGATATGGTGACACCCAATTGGTATGGACCCCGCTACGTAGAAGCAGTCAGGTAGGAACACCATCTGCATGTTATTGTGCGGCTGGTGGCCCTAATTCTCACTCATGTAGTGGTAGTGTTATCCGAGTGTTTACGAATATGGCGAATACATTCCCATCGGTTCGATTCGTGGTTAGAGTATCAGCATCTAATGGTGCGACGACTGGCGACGTTGAATTGTTCGCTCGTATTCCATCATCAGTGAGTAACACTTCATCAGGTACGTTCAACTTCAACTTCAACCTAAATGGCGTAAACCACGTAATGGTTGTGAACGCTAATTGGTATAAGAGTAGTGGTGATAATAATGCAGCAAATGGTACATTATCAGCAAATTACAGCTTCAACACTGGTATCGGCCGGTGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a74bc0e70ed667a05a3ea0cda9a1d605bb08e513e648cd2c3df370f016fed9ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4392
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank