Protein
View in Explore- Genbank accession
- XKC19578.1 [GenBank]
- Protein name
- putative tail fiber protein
- RBP type
-
TSP
- Protein sequence
-
MPQFAYAFDPHAANDDNIVRDEAHVLSASMSPYRVIIPNFAPFFEDTELVVKCNNKLLLMGVDYYLSHKYFTGIERTGKLMYSGIWIVNPKLSGTVTVKYRTLGGKFPVQRSIIDDYLANRQSDPQHATWEEVINDDPVFPPVDLQFDRDAFVDEADVQTSIREIADVVRNKDQTTNDMYMLLDDWFNQLKKVVDESPLRTHQTNKANPHGEVWFESEALHEAGIAKDTAKVANMTINQLADYVNSRGITQTDLDNYVKRSDGNTVVGDVVLKDGLLAIEFQHGNSAYLRINMSNGNVSFDAISDVLIHADKDKNSPGAKAVLKSGAVELSVTSRGGSQTDNDLRINDKVIVHDGNLEEHIPNVGTHVIDIQTKDSDTLDFQGKGIDNDPVKANALVPLATESVQGMEEGTVDETKDQPDKVAFSEGAFKVDAKIKQKVPNTVKINGVRLDRDINLDKSHFGLSAVDDLADINMPVNQNHTNQLANKASGDHSHSFEEMGFVRATEGTFGITFIEDDPTSKATDRAFSGPKLAELYADVLDLDFTASQRLPDDVIDITQYGGNHWLPVPVQGSYEGSGHFQNARQMAGFVEEDGKCIIYRNGYDLVTQGIFYAYATFLSDGSMVDYVATATKYHPAKLPEDWSVLYCLRSSRDGMYVRVQDDAGEQRGAIVLYNNSGNGENHSIALMPTGMEITETIPFIYNNFVYVVGTWVGSGHGIKHTLYRAPISDFDSFGVANFQVVNMTGRDFFGNEKTGAPLKLVSGDWSDDPNAEVICIRKDDRYSMNPRWNNIGLAVAVKGNQLRIFAKMNSYESSSFNSSRCNWSYSVVINLDTNRLTIDPGRTLPYTFNTHGSYAGDVLVGNSQSMGSANSGNIGAGELTDGKYVAVWQTYNEATPSIRAQTFDAVDYFESLRADTRSIAGIGSSRSLTGNFGSIVGVMQRHISILPNNYLHTYSGWNLCKYVPGYTFANGMEGFGPHVDRTYDGNWRKYRHNVYYTDGGNVEGAYGGILHLANLSSWTTMDKAHNTSGTISTTADHLNALSQALESVFAQDANGDTLEGIDVVVYVLPDTRVPPMWTAVGRFKKVSDGASRSINRIGTLEDVPRSGSIGNFRVKDVLGYGDGVGRYASYAAPRDYLPNSGLLIDEQSKKMIMVLNTNCAYYYSSHVRSYLVEIDYSGSESTAAMKHNTAVYSYRATGMLITREYGLVVPIQHNSFTAVTARHIGKTSADWEKYYASKDYYKDNVVLHTSQVAEGWVVYFTQEVQFFINSTRFLIPETGLDLSTLFPSTYKSNTFYIYASVEGGTAKYVIKEQYETDSSTEIYIGYCRTTDEKIVDLQVNRATRLGDFREFTEHLNDPKPHGLDLSQVTTDDIGLGLIENKDIRHTLVIPTFKDVFNSWYRLSHQGEKPYPAIPAETTTWTYDEATDAIRNTTNSSSLVGMVSPEDVEVGDYDFITGLSSTSADDDWVGVIFAMVVKDGVEHTLTALCSGTDTRDVHFAVYYNWGQGATRGQETLYSHTTSLKHGWDEIPERILTIKRRGDVFDLHITKMMTDAATERTFKFDVKNYPALATLFRGAVRFGYCAQSQPFSTWRNIMRPDEDGKNYYASQQLYRDNFGWSNRLKTISGVVVPTSDGTDNDVYDVPIPAEYRDLNYQAWCNYDYSGDSHGGLSTAEITSARVGDVIRFTARSNGLGGFYTAKLRYNITFFNDVRMI
- Physico‐chemical
properties -
protein length: 1714 AA molecular weight: 190830,00820 Da isoelectric point: 5,12093 aromaticity: 0,10735 hydropathy: -0,39259
Domains
Domains [InterPro]
No domain annotations available.
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
1714
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 548 | 548 | 0,8217 |
| Central domain | 549 | 786 | 239 | 0,9279 |
| C-terminal | 787 | 1714 | 927 | 0,3882 |
Note: Constraints were applied during segmentation.
Fixed 50 C-terminal predictions appearing before Central domain
Fixed 50 C-terminal predictions appearing before Central domain
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-548
1-548
Central
549-786
549-786
C-terminal
787-1714
787-1714
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Vibrio phage pVp-JHP1101 [NCBI] |
3374749 | No lineage information |
| Host |
Vibrio parahaemolyticus SNUVpS-1 [NCBI] |
1234128 | Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio parahaemolyticus |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
XKC19578.1
[NCBI]
Genbank nucleotide accession
PQ451753
[NCBI]
CDS location
range 101028 -> 106172
strand -
strand -
CDS
ATGCCACAGTTTGCGTATGCGTTTGACCCACATGCTGCTAACGATGACAACATCGTACGTGATGAAGCACATGTGCTGAGTGCGTCCATGTCACCGTATCGTGTCATTATCCCTAACTTCGCACCGTTCTTTGAAGACACTGAACTTGTAGTGAAATGCAACAACAAGCTGTTGCTTATGGGTGTTGACTACTACCTATCGCATAAATACTTCACTGGTATTGAGCGTACTGGTAAGTTGATGTATAGCGGTATTTGGATTGTCAACCCAAAACTTTCAGGAACCGTAACAGTTAAATATCGCACACTTGGCGGTAAGTTCCCTGTACAACGTTCAATCATTGACGACTACCTAGCAAATCGTCAAAGTGATCCACAACACGCAACATGGGAAGAAGTCATTAATGACGATCCTGTGTTCCCACCAGTTGACCTACAGTTTGACCGCGATGCTTTCGTAGATGAAGCAGACGTTCAGACTTCAATTCGTGAAATTGCTGATGTAGTGCGTAATAAAGACCAAACCACAAATGACATGTACATGTTGTTAGACGATTGGTTTAACCAACTGAAAAAGGTTGTAGATGAGTCGCCGTTACGTACACACCAGACCAACAAGGCTAACCCTCACGGTGAGGTGTGGTTTGAGTCAGAAGCTTTGCATGAGGCAGGTATCGCTAAAGATACAGCTAAAGTAGCAAACATGACGATTAATCAACTGGCCGATTATGTAAACTCACGTGGCATTACACAGACTGACTTAGACAACTACGTTAAGCGTAGTGACGGCAACACTGTAGTAGGTGATGTCGTTCTTAAAGATGGTCTGCTAGCAATTGAGTTTCAGCATGGGAATAGTGCATATCTTCGTATTAACATGTCAAACGGTAACGTGAGTTTTGATGCGATATCTGATGTGTTAATTCATGCAGATAAGGACAAGAACAGTCCGGGTGCTAAAGCGGTGCTTAAATCAGGTGCTGTGGAATTGTCAGTGACTTCACGTGGTGGTAGTCAGACGGACAATGACCTACGTATTAACGATAAGGTGATTGTTCACGATGGCAACCTAGAAGAGCATATCCCGAATGTTGGGACTCATGTGATTGATATCCAGACTAAGGACTCTGATACGTTAGACTTCCAAGGTAAGGGTATTGATAACGATCCTGTTAAGGCGAATGCGCTTGTACCTCTAGCTACTGAGTCAGTTCAGGGTATGGAGGAAGGTACGGTCGATGAGACTAAAGACCAACCTGATAAAGTTGCATTCAGTGAAGGTGCTTTTAAAGTTGATGCTAAGATTAAGCAGAAAGTACCAAACACAGTTAAGATCAACGGTGTGCGTCTTGATAGAGATATCAATTTAGATAAGTCACACTTTGGTCTAAGTGCGGTAGATGACTTAGCAGACATCAACATGCCTGTTAACCAGAACCATACTAACCAGTTAGCTAATAAAGCATCAGGTGACCACAGTCACTCTTTCGAAGAGATGGGCTTTGTTCGTGCAACTGAAGGTACGTTTGGTATCACATTCATTGAAGACGACCCTACGTCGAAAGCAACTGACCGTGCGTTCTCAGGTCCTAAGTTGGCAGAACTGTACGCTGACGTCCTTGACTTGGACTTTACAGCAAGTCAACGTTTACCAGATGATGTAATCGATATCACTCAGTACGGCGGTAACCACTGGTTGCCTGTTCCGGTACAAGGTTCATATGAGGGTTCTGGTCACTTCCAGAATGCTCGTCAAATGGCAGGATTTGTAGAAGAAGATGGTAAGTGTATCATTTATCGTAACGGTTACGACTTAGTAACTCAAGGTATCTTCTACGCTTATGCTACTTTCTTAAGTGATGGTAGTATGGTTGATTACGTAGCAACTGCAACGAAATATCATCCTGCTAAATTGCCAGAAGACTGGAGTGTGTTATACTGTTTACGTAGTTCACGTGACGGCATGTATGTTCGTGTTCAGGATGATGCGGGTGAACAGCGTGGTGCAATTGTTCTTTACAACAACTCAGGTAATGGTGAGAACCACTCGATTGCGTTGATGCCAACTGGAATGGAAATTACTGAAACTATCCCGTTCATTTACAACAACTTCGTTTACGTCGTTGGTACTTGGGTGGGTTCTGGTCATGGTATCAAACATACGTTGTACCGTGCGCCTATTTCAGACTTTGATTCATTCGGTGTTGCAAACTTCCAAGTTGTGAATATGACCGGACGTGACTTCTTCGGTAATGAGAAGACGGGTGCGCCACTTAAGTTGGTTTCAGGTGACTGGAGTGATGATCCAAATGCTGAAGTTATCTGTATTCGTAAAGATGATCGCTACAGTATGAATCCACGTTGGAACAACATCGGTCTTGCCGTTGCTGTTAAAGGCAATCAGTTACGTATCTTTGCTAAGATGAACTCGTATGAATCATCATCGTTTAACTCATCTCGCTGTAACTGGTCATACAGTGTCGTCATCAACTTAGACACTAACCGACTAACTATTGATCCGGGACGTACTCTGCCATATACGTTTAATACACACGGTAGTTATGCAGGTGATGTGTTAGTGGGTAACTCCCAGAGCATGGGTTCAGCTAACAGTGGTAATATAGGTGCGGGCGAGTTAACGGATGGCAAGTATGTCGCGGTGTGGCAAACCTATAACGAAGCAACGCCGTCAATCCGAGCACAAACCTTTGATGCTGTAGATTACTTCGAATCGCTGCGTGCTGATACGCGTTCTATTGCAGGGATTGGTAGTAGCCGTAGTCTAACAGGTAACTTTGGTAGTATCGTTGGTGTAATGCAACGACATATCTCAATCTTACCTAACAACTATCTACATACCTACAGTGGGTGGAACTTGTGTAAGTATGTTCCTGGCTATACGTTTGCAAACGGTATGGAAGGCTTTGGCCCACATGTAGACCGTACGTATGATGGAAACTGGCGTAAGTATCGTCACAACGTTTATTACACTGACGGTGGTAATGTTGAAGGTGCATATGGCGGTATCCTGCATTTGGCTAACTTATCGTCTTGGACGACGATGGATAAAGCACATAACACGTCAGGCACTATCTCAACAACAGCAGACCATTTGAATGCGTTATCCCAAGCACTTGAATCAGTCTTTGCCCAAGATGCTAATGGTGATACGTTGGAAGGTATCGATGTCGTTGTGTATGTGCTTCCAGATACACGTGTTCCACCTATGTGGACAGCAGTAGGTCGCTTCAAGAAAGTGAGTGATGGTGCGTCACGAAGCATTAACCGCATTGGTACGTTAGAAGATGTCCCTAGAAGTGGTAGTATCGGTAACTTCCGTGTTAAAGACGTGTTAGGTTACGGCGATGGTGTTGGTCGTTATGCATCATACGCAGCACCGCGTGATTATCTCCCTAATAGTGGGTTGCTTATTGATGAGCAGTCTAAGAAGATGATCATGGTGTTGAACACTAACTGTGCGTATTACTACTCAAGTCACGTTCGTTCGTACTTGGTAGAAATTGATTACTCAGGTAGTGAGTCAACTGCTGCGATGAAACACAACACTGCTGTGTACAGTTACCGTGCCACGGGTATGCTGATCACTAGAGAGTATGGTCTGGTAGTGCCGATTCAACACAACTCATTTACTGCTGTAACGGCTCGTCATATCGGTAAAACATCCGCCGACTGGGAGAAGTATTACGCGAGTAAAGATTACTACAAAGATAATGTAGTACTGCACACCTCTCAGGTTGCAGAGGGTTGGGTTGTCTACTTTACACAAGAAGTACAATTCTTCATCAATAGTACACGATTCTTGATCCCTGAAACGGGCTTAGACTTATCGACGTTATTCCCGTCTACATATAAGTCAAATACGTTTTACATCTACGCGTCTGTTGAAGGCGGTACTGCCAAGTACGTTATTAAGGAGCAATACGAAACAGATAGCTCTACCGAAATCTACATCGGTTACTGTAGAACCACCGACGAGAAGATTGTCGACCTACAAGTAAACCGTGCAACACGTCTAGGTGACTTCCGAGAGTTCACTGAACACTTGAACGACCCTAAACCACACGGTCTTGATTTGTCTCAGGTAACAACCGATGACATTGGTCTAGGTCTGATTGAAAACAAAGACATTCGTCACACATTGGTTATCCCTACGTTTAAAGACGTATTTAATAGTTGGTATCGTTTATCGCACCAAGGTGAGAAACCGTATCCTGCTATCCCTGCTGAAACCACAACGTGGACTTACGATGAAGCAACTGACGCAATCCGTAACACAACAAACAGCTCATCGCTTGTTGGTATGGTATCGCCTGAAGATGTTGAAGTAGGTGACTATGACTTTATTACAGGTCTATCGTCAACCAGTGCGGATGATGACTGGGTTGGTGTTATCTTTGCGATGGTGGTTAAAGATGGCGTAGAACACACGCTAACAGCACTGTGTTCTGGTACAGATACACGCGACGTACACTTCGCGGTCTATTACAACTGGGGGCAGGGCGCTACACGTGGTCAGGAAACGTTGTATTCACACACAACGTCGCTTAAACATGGTTGGGATGAAATCCCAGAGCGTATCCTGACAATTAAACGTCGAGGTGATGTGTTTGATTTACACATTACTAAGATGATGACGGATGCTGCAACTGAACGTACGTTTAAGTTTGACGTTAAGAACTATCCTGCGCTAGCAACACTCTTCCGTGGTGCGGTTCGTTTTGGTTACTGTGCGCAGTCTCAACCGTTCTCTACATGGCGTAATATCATGCGACCGGATGAAGATGGTAAGAACTACTACGCATCTCAGCAACTATATCGTGATAACTTTGGTTGGTCTAACCGATTGAAGACAATCAGTGGCGTAGTAGTGCCAACGAGTGATGGTACGGATAACGATGTGTATGATGTACCTATCCCTGCGGAGTACCGTGACTTGAATTATCAGGCGTGGTGTAACTACGATTACTCTGGTGACTCACATGGCGGTCTATCTACCGCTGAAATAACTTCGGCAAGAGTAGGTGATGTGATTCGATTCACTGCCCGTAGTAACGGTCTTGGTGGTTTCTATACAGCTAAATTGCGTTACAACATTACGTTCTTCAATGACGTGCGAATGATTTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
31bca8c781e806ef7d377ce6042cfa4f9d93878427bbb829be60696f9d5b5300
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Complete genome of Vibrio phage pVp-JHP1101 | Park,J.H., Kim,S.G. and Park,S.C. | 2025-12 | — | GenBank |