Protein

View in Explore
Genbank accession
YP_009608423.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MADLKAGSTTGGAVIWHQGNFPLMPAGDDVLYKTFKLYSEYNKPQAADNDFVSKANGGTYASKVTFNGGVQVPYAVNNTNPCGVYPGNGDNATFAVANIDIVSWNGIGFKSSQGSAARTVVINTRNGDISTKGVVSASGQVRSDMTAPVAANDLTRKDYVDGRINIVTDNANSRVLRSGDTMAGTLTAPNFFSQNPASEANHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:221 AA
molecular weight: 23463,65800 Da
isoelectric point:6,06940
aromaticity:0,09502
hydropathy:-0,31222

Domains

Domains [InterPro]
DC_0466
STR
1–219
DC_0466
IPR005601
STR
56–193
IPR005601
YP_009608423.1
1 221
Architecture
STR
STR 1-219 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009608423.1
1 221
Domain Start End Length (AA) Confidence
N-terminal 1 122 122 0,3861
Central domain 123 210 89 0,1744
C-terminal 211 221 10 0,9117
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-122
Central
123-210
C-terminal
211-221

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ST0
[NCBI] 		2005047 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host Escherichia coli H8
[NCBI] 		2072452 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009608423.1 [NCBI]
Genbank nucleotide accession
NC_041990 [NCBI]
CDS location
range 75208 -> 75873
strand -
CDS
ATGGCCGATTTAAAAGCTGGTAGTACAACTGGCGGTGCTGTCATATGGCATCAAGGTAATTTCCCTTTAATGCCAGCAGGTGATGACGTCCTGTATAAAACGTTTAAACTCTATTCAGAATATAATAAACCACAAGCGGCTGATAATGATTTCGTTTCTAAAGCTAATGGTGGTACGTATGCATCAAAGGTAACATTTAACGGTGGCGTTCAAGTTCCGTATGCTGTAAACAACACAAACCCATGCGGCGTTTATCCAGGTAACGGTGATAATGCTACTTTTGCTGTAGCAAATATCGATATTGTTTCGTGGAATGGTATTGGTTTTAAATCATCGCAAGGTTCAGCAGCTCGAACTGTTGTAATTAACACACGTAATGGCGATATTAGTACAAAAGGCGTTGTATCTGCTTCAGGACAAGTAAGAAGCGATATGACTGCTCCGGTTGCAGCAAATGATCTCACAAGAAAAGATTACGTTGATGGACGAATAAATATTGTTACAGATAACGCAAATTCCCGTGTATTGCGTTCTGGCGATACCATGGCTGGTACTTTAACAGCACCAAACTTTTTCTCACAGAATCCGGCGTCTGAGGCTAATCATGTTCCTCGTTTCGACCAGATTGTAATTAAAGATTCTGTTCAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a9bc234c6d51bc7138a168effae86cb17cbe6ff32985344bd033f74ebdbc9691
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6810
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia phage ST0 Liu,X., Liu,H. and Li,J. 2017-12-19 — GenBank