Protein

View in Explore
Genbank accession
AAR90025.1 [GenBank]
Protein name
33
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MEVQGSLGRQIQGISQQPPAVRLDGQCSEMVNMVPDVVEGTKSRMGTTHIAKLLEYGEDDMAVHHYRRGGEGEEEYFFIMKKGQVPEIFDKQGRKCMVQSQDAPMTYLSEVTNPREDVQFMTIADVTFMLNRKKIVKARPERSPQVGSTAIVFMAYGQYGTHYKIIIDGVVAAGYKTRDGAEAHHIEDIRTESIAYNLYQSLQSWDKIADYEIQLDGTSIYITRRDGSTTFDITTEDGAKGKDLVAIKYKVASTDLLPSRAPEGYKVQVWPTGSKPESRYWLQAEKQNGNIVSWKETLAADVLIGFDKSTMPYIIERTGFVNGIAQFKIRQGDWEDRKVGDDLTNPMPSFIDEEVPQTLGGMFMVQNRLCVTAGEAVIATRTSYFFDFFRYTAVSAVATDPFDVFSDASEVYQLKHAVTLDGSTVLFADKSQFILPGDKPLEKSNVLLKPVTTFEVNNNVKPVATGESVMFATSEGAYSGIREFYTDSYSDTKKAQAITSHVNKLLEGNVIMMSASTNVNRLLVLTDKYRNIIYCYDWLWQGTERVQAAWHKWEWPLGTFIRGMFYSGEHLYLLIERGSTGVYLERMDMGDALVYNLNDRIRMDRQAELIFRHIKAEDVWVSEPLPWQPTDVTLLDCVLIDGWDSYIGGSFLFSYNPGDNTLTTTFDMHDDDHVKAKVVVGQLYPQEFEPTQVVIRDNQERVSYIDVPTVGLVHLNLDKYPDFKVEVKNLKSGKVRNVLASNRVGGAINNIVGYVEPREGVFKFPLRSLSTDTVYRVMVESPHTFQLRDIEWEGSYNPTKRRV
Physico‐chemical
properties
protein length:803 AA
molecular weight: 90997,01820 Da
isoelectric point:5,33129
aromaticity:0,10585
hydropathy:-0,34433

Domains

Domains [InterPro]
IPR058003
TTP
3–802
IPR058003
AAR90025.1
1 803
Architecture
TTP
TTP 3-802 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAR90025.1
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9895
Central domain 146 359 215 0,1377
C-terminal 360 803 443 0,2643
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-359
C-terminal
360-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage SP6
[NCBI] 		2907955 Uroviricota > Caudoviricetes > Autographivirales > Molineuxvirinae > Zindervirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAR90025.1 [NCBI]
Genbank nucleotide accession
AY370673 [NCBI]
CDS location
range 24484 -> 26895
strand +
CDS
ATGGAAGTTCAAGGTTCTTTAGGTCGCCAGATTCAAGGCATAAGCCAGCAACCTCCAGCAGTAAGATTAGATGGACAGTGTTCAGAAATGGTTAACATGGTGCCTGATGTAGTGGAGGGAACCAAATCCCGCATGGGTACAACGCATATTGCCAAACTCTTAGAATATGGTGAAGATGACATGGCAGTGCATCATTACCGTAGAGGGGGTGAAGGTGAGGAGGAGTATTTCTTCATAATGAAGAAGGGTCAAGTACCTGAAATCTTTGACAAACAAGGACGTAAGTGTATGGTGCAATCACAGGATGCACCTATGACCTATCTTAGTGAAGTGACTAACCCTAGGGAAGATGTGCAATTTATGACTATTGCAGATGTGACCTTCATGTTGAATCGCAAGAAGATCGTCAAGGCCCGACCTGAACGCTCCCCTCAAGTAGGTAGCACTGCTATTGTCTTTATGGCCTATGGTCAATACGGTACGCACTACAAGATTATTATTGATGGCGTAGTGGCTGCTGGCTATAAGACTAGGGATGGTGCCGAGGCACACCATATTGAAGACATCAGAACTGAAAGCATAGCTTACAATCTGTACCAGTCACTCCAAAGTTGGGATAAGATTGCAGACTATGAAATCCAGTTAGATGGCACCTCAATCTATATCACAAGGCGGGATGGCTCTACTACCTTCGATATAACCACAGAAGATGGGGCAAAAGGTAAGGATTTGGTAGCCATCAAGTACAAGGTGGCATCTACAGACCTCTTACCATCACGTGCACCAGAAGGCTACAAGGTGCAAGTCTGGCCTACTGGCAGTAAGCCTGAATCTCGGTACTGGCTGCAAGCTGAGAAGCAGAATGGGAACATTGTCTCTTGGAAGGAGACACTGGCCGCCGATGTGTTGATAGGGTTTGATAAGTCAACCATGCCTTACATTATAGAACGTACAGGGTTTGTTAATGGAATTGCGCAGTTTAAAATTAGACAAGGCGACTGGGAAGATCGCAAAGTAGGCGATGACCTGACTAACCCTATGCCTTCATTCATTGATGAGGAAGTGCCTCAGACATTAGGTGGTATGTTTATGGTGCAGAATCGTCTATGTGTTACTGCTGGCGAGGCTGTAATTGCAACTCGCACATCTTACTTCTTTGACTTCTTCCGATATACCGCCGTATCTGCTGTAGCCACTGACCCATTTGATGTATTCTCAGATGCGAGTGAGGTTTATCAGCTTAAACACGCGGTTACATTGGACGGGTCTACTGTCTTGTTTGCAGATAAATCTCAGTTCATCCTTCCTGGAGATAAGCCTCTTGAGAAGTCAAACGTATTGCTCAAGCCTGTAACCACATTTGAAGTTAACAATAATGTCAAGCCTGTAGCTACAGGTGAGTCCGTAATGTTTGCTACAAGTGAAGGTGCTTACTCAGGCATAAGGGAGTTCTACACAGACTCTTATAGTGATACCAAGAAGGCACAAGCAATAACTAGTCATGTCAATAAGTTGCTAGAAGGTAATGTTATTATGATGTCAGCCAGTACTAATGTGAACAGGCTGCTTGTCTTGACCGACAAGTACCGAAACATTATCTACTGCTATGACTGGTTGTGGCAAGGAACCGAACGTGTACAAGCTGCATGGCATAAATGGGAGTGGCCTTTGGGTACGTTTATCCGTGGCATGTTCTATTCAGGTGAGCACCTATATTTGCTCATAGAAAGAGGCAGTACTGGTGTGTATCTTGAGCGCATGGACATGGGTGATGCGCTTGTATATAACCTGAATGACCGCATCCGTATGGATAGGCAAGCTGAACTTATCTTTAGACATATCAAGGCAGAAGATGTGTGGGTGTCTGAGCCGTTACCTTGGCAACCAACCGATGTAACATTGCTTGACTGTGTACTGATAGATGGGTGGGACTCTTACATAGGCGGGTCTTTCTTGTTTAGCTATAACCCAGGCGATAACACCTTAACTACAACCTTTGATATGCACGATGATGACCATGTGAAGGCTAAGGTAGTAGTCGGCCAGTTATACCCACAAGAGTTTGAACCTACACAGGTAGTAATACGTGATAACCAAGAGAGGGTGTCTTATATAGATGTGCCAACGGTGGGGCTTGTTCACCTAAACCTAGACAAATACCCTGACTTCAAGGTTGAGGTCAAGAATTTGAAGAGTGGCAAAGTACGTAATGTGCTGGCCTCTAACAGGGTGGGTGGTGCCATAAATAATATTGTTGGCTATGTAGAGCCGAGAGAAGGTGTGTTCAAATTCCCACTAAGGTCTCTTAGCACCGACACAGTTTATCGTGTGATGGTAGAATCGCCTCATACCTTCCAGCTTAGGGATATTGAGTGGGAAGGTTCGTACAACCCTACTAAGAGGAGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7521092d46440f861002fc8cc661e69dfd35a10e1286d6c64875d9f369816416
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9028
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A domain of the gene 4 helicase/primase of bacteriophage T7 required for the formation of an active hexamer Notarnicola,S.M., Park,K., Griffith,J.D. and Richardson,C.C. 1995 7650041 GenBank
Bacteriophage SP6 is closely related to phages K1-5, K5, and K1E but encodes a tail protein very similar to that of the distantly related P22 Scholl,D., Adhya,S. and Merril,C.R. 2002 11976314 GenBank
Genomic analysis of bacteriophages SP6 and K1-5, an estranged subgroup of the T7 supergroup Scholl,D., Kieleczawa,J., Kemp,P., Rush,J., Richardson,C.C., Merril,C., Adhya,S. and Molineux,I.J. 2004 14729334 GenBank