Protein

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Genbank accession
YP_011992358.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSRQLMPKSGAMAPYVVVNRDAAVAGVFSVDGEAGAVVLTSKYLQLTKYTTDKTATDASINSINESIGNINTAIGGINTNLGTKAAKGANNDITELNALTKAITIAQGGTGASTLLEAKTALQIDRLRQQDNGTFITSPDGKYSLFVYNSGDFGLINSSTAAVQAMKVQFGGTGASDAKTARKNLDVPVGATAVPIPPNSNVLGFIGATGQSGYYSSGNLITFGPPVDEDWWTFNFHCHSTDIDGFAQYGILKAVGKSGSSWLTILNGTGNWLPWQKQFNGQSTVPITNGGTGATTVAKARENLLVDQVDRAGEQSMLWAPDKDTYFFVYAAGDWGVYDKSAAIRKPLPIASGGTGGTDVNTARNNLSLGTRQQVIFDSVYLPDYKGGDWSYGYGCKINGGALSSWSSRPVAVSVDGNTTDVAVGIAKVTIPGKGYACNVDGILWGDGTSELDIMTGASRFYFHSDGGARASNWINVSDIRTKSNLTKIEDSLSKVKLLCGYTYQKRTNIDDPESKDYSMEAGIIAQDLQKVLPEAVYQVSQDGYLGVSYGGVSALLVSAVNELNGIVEQQRQEIDELKELVKQLLTK
Physico‐chemical
properties
protein length:588 AA
molecular weight: 62392,04460 Da
isoelectric point:5,26616
aromaticity:0,08503
hydropathy:-0,19269

Domains

Domains [InterPro]
DC_1202
STR
1–588
DC_1202
IPR030392
CHP
478–582
IPR030392
IPR030392
CHP
478–538
IPR030392 Coil
YP_011992358.1
1 588
Architecture
STR
STR 1-588
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011992358.1
1 588
Domain Start End Length (AA) Confidence
N-terminal 1 382 382 0,5779
Central domain 383 577 196 0,2287
C-terminal 578 588 10 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-382
Central
383-577
C-terminal
578-588

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage IrmaTschudi
[NCBI] 		2851992 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus irmatschudi
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011992358.1 [NCBI]
Genbank nucleotide accession
NC_105115.1 [NCBI]
CDS location
range 24110 -> 25876
strand +
CDS
ATGTCTAGACAATTAATGCCAAAAAGTGGGGCTATGGCCCCCTATGTTGTTGTTAACAGAGATGCGGCGGTTGCTGGTGTTTTCTCTGTTGATGGGGAGGCTGGTGCTGTTGTACTAACCTCTAAATATCTACAGCTTACAAAATATACTACTGATAAGACTGCTACTGACGCATCTATTAATAGTATTAACGAATCAATAGGTAATATCAATACTGCTATTGGCGGTATTAACACTAACCTAGGTACGAAGGCGGCAAAAGGTGCTAATAACGATATTACAGAATTAAACGCACTGACTAAGGCTATTACTATTGCTCAGGGTGGTACAGGTGCTAGCACCTTATTAGAGGCAAAAACAGCTTTACAAATAGATCGTTTAAGACAGCAGGATAATGGTACCTTTATTACGTCTCCTGATGGAAAATATTCTTTATTCGTTTATAATAGCGGAGACTTTGGATTAATCAATAGTTCTACCGCTGCCGTCCAGGCCATGAAAGTGCAGTTCGGTGGAACAGGGGCTTCTGATGCTAAAACAGCAAGAAAAAATCTAGATGTTCCTGTAGGGGCTACTGCTGTACCTATTCCTCCTAACAGTAATGTTCTTGGTTTTATTGGTGCTACCGGGCAAAGTGGTTACTACTCTTCAGGTAACCTAATTACCTTTGGTCCTCCAGTAGACGAGGATTGGTGGACTTTTAATTTTCACTGTCATAGTACAGATATTGATGGCTTCGCCCAATACGGTATATTGAAGGCGGTAGGAAAATCTGGAAGCTCATGGCTTACTATACTAAACGGTACTGGTAACTGGTTGCCGTGGCAAAAACAATTTAACGGTCAGTCTACCGTTCCTATTACAAATGGAGGGACAGGAGCTACTACAGTGGCTAAGGCAAGAGAGAATCTCTTAGTAGACCAGGTAGATAGAGCGGGGGAACAATCAATGCTTTGGGCTCCGGATAAAGATACCTATTTCTTTGTATATGCTGCAGGAGATTGGGGTGTCTACGATAAGTCTGCTGCTATTAGAAAACCTCTACCTATTGCTTCGGGAGGTACAGGAGGTACAGATGTTAATACTGCCCGTAATAACTTATCTCTTGGCACACGTCAGCAAGTAATTTTCGACTCAGTATACCTGCCTGACTATAAAGGAGGGGATTGGTCGTATGGTTATGGTTGTAAAATTAATGGGGGTGCTCTATCTAGTTGGTCTTCTAGGCCTGTAGCTGTTAGCGTAGATGGTAACACTACTGATGTAGCTGTAGGTATTGCCAAAGTAACTATTCCTGGAAAGGGATACGCTTGTAACGTTGATGGTATCCTATGGGGGGATGGCACTTCTGAACTGGATATAATGACAGGTGCTTCCAGATTCTATTTCCATAGTGATGGGGGAGCTAGAGCATCTAACTGGATTAACGTTTCTGATATTAGAACTAAGTCTAATCTTACTAAGATCGAAGATTCTCTAAGTAAGGTTAAGCTGTTATGCGGCTATACTTACCAGAAACGAACTAATATTGATGACCCTGAAAGCAAAGATTATTCTATGGAAGCAGGTATTATTGCTCAGGATCTCCAGAAAGTATTACCTGAAGCTGTATACCAAGTAAGCCAAGACGGTTATCTTGGTGTTAGTTATGGTGGTGTTTCTGCTCTTCTAGTTAGCGCTGTTAACGAACTTAATGGGATTGTTGAGCAACAGAGGCAAGAAATTGATGAACTCAAGGAATTAGTAAAACAACTACTCACTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9a33e1dbc75937ee21f7cc740e032f471bb0de8f302d4c3c206b3128a5794936
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7299
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank