Protein

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Genbank accession
YP_007237107.1 [GenBank]
Protein name
phage tail length tape-measure protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MKQIIESAREYLQNNNRIKTACLITLELPQSDAEFIYLTDYFRDVVYNGILYVSGKVKSVATHKQNRDLSIGSLSFTITGTAEDEVLKLVQNGVSFLDRSISIHQAVIDQDGSILPVDPETLGPLLYFRGKITGGGIKDNVSTSGVGTSVITWNCSNQFYDFDRVNGRFTDDASHRGLEVVAGELVPSSGAKRPEYQDDYGFFHSNKSVSILAKYQVQEERYKLQSKKKLFGLSRSYSLKKYYETVTKEVDIDFNLAAKFLPIVYGVQKVPGLPIFADTELHNPNIVYVVYAFCEGEIDGFLDFSFGDVPMICVDPNDSTSRTCFGTKKLSGDTMQRIASGMPSSEPSTHGQEYRYNDGNGDIRIWTFHGKADQDAASVLVDIAARNGFYLQNSYGNGPEYWDTRYKLLDTAYAVVRFTINENRTEIPEVSAELQGKKITVYQADGSSKSDATSLNGIWQTLDYLTSNRYGANITIDQFPLQQLIQEAAILDIVDESYQQSWQPYWRYTGWTDLSAENRQMVQMNTILDGSESVFKNVQELLDSYSGAINNLSGQYRITVEKFSDTPLEINFLDTYGDLELSDTTGRTKFNSVQASIVDPALSWKTNSITFFNSMFKEQDKGLDKKLQLSFANITNYYTARSFADRELKKSRYSRTLTFSLPYHFIGIEPNDPIAFTYERYGWDKKFFLVDEVENSREGKINVTLQEYAEDVFINSEQVDNSGNDIPDVSNSVLPPRDFMYTPTPGGLVGSIGKNGELSWLPSLTNNVVYYSITKSGRTNPYIIQQLETLPNDRMIQDIVGEAPGLVIFEIRAVDINGRRSSPVTLSLELNSAKNLSVVGNFRVLNTATGDSSEFIGPDVKLAWDRLEEEDLIQGIFYTLEIRDIDQNMLRSVRIEDQYVYDYLLIYNKADYALLHEDALGINRRLFFRIRAEGDNGEQSVDWASI
Physico‐chemical
properties
protein length:946 AA
molecular weight: 106839,09750 Da
isoelectric point:4,79303
aromaticity:0,11311
hydropathy:-0,37516

Domains

Domains [InterPro]
DC_0187
STR
227–942
DC_0187
IPR032876
ATT
591–683
IPR032876
YP_007237107.1
1 946
Architecture
STR
ATT
STR
STR 227-590 | ATT 591-683 | STR 684-942 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007237107.1
1 946
Domain Start End Length (AA) Confidence
N-terminal 1 310 310 0,9487
Central domain 311 538 229 0,2388
C-terminal 539 946 407 0,0069
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-310
Central
311-538
C-terminal
539-946

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR2-01
[NCBI] 		1206557 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus R201
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007237107.1 [NCBI]
Genbank nucleotide accession
NC_019919 [NCBI]
CDS location
range 90798 -> 93638
strand -
CDS
ATGAAGCAAATAATTGAGTCAGCAAGAGAGTACCTGCAAAACAATAATAGAATAAAAACAGCTTGCTTAATTACTCTTGAGCTACCACAATCTGATGCAGAATTTATTTATTTAACAGATTACTTCCGAGACGTAGTATATAATGGTATACTTTACGTCTCCGGTAAAGTAAAATCTGTAGCAACACACAAACAAAACCGTGATCTTTCCATTGGTAGTCTGTCCTTCACGATTACAGGTACTGCGGAAGACGAAGTACTGAAACTAGTGCAGAACGGCGTATCCTTCCTAGATAGATCTATATCTATTCACCAAGCTGTTATTGATCAAGATGGCAGCATTCTTCCAGTAGACCCTGAAACCTTAGGACCTTTACTATACTTCAGAGGTAAAATCACTGGAGGCGGTATCAAGGATAATGTGAGTACATCAGGTGTAGGTACTTCAGTTATTACCTGGAACTGTTCCAACCAATTCTATGATTTTGATCGTGTCAACGGTAGATTTACTGATGATGCCAGTCATCGTGGATTAGAGGTTGTAGCTGGTGAACTAGTTCCCTCTAGTGGAGCTAAGCGTCCAGAGTACCAAGATGACTATGGATTTTTCCACTCCAATAAGAGCGTTTCTATTCTAGCTAAATACCAAGTACAGGAAGAACGTTATAAGCTCCAGTCTAAGAAAAAGTTGTTTGGTCTATCACGAAGCTACAGTCTTAAGAAATACTATGAGACTGTTACTAAAGAAGTTGATATCGATTTTAATCTTGCAGCTAAGTTCCTTCCTATTGTCTATGGGGTACAGAAAGTTCCAGGACTGCCTATTTTTGCTGATACTGAACTCCATAATCCAAATATTGTATACGTAGTGTATGCCTTCTGTGAGGGTGAGATTGATGGATTCCTTGACTTCAGCTTTGGTGACGTTCCAATGATCTGTGTAGACCCAAATGATAGTACTTCTCGTACATGTTTTGGTACCAAGAAGTTATCTGGTGATACAATGCAACGTATTGCATCTGGTATGCCATCCAGTGAACCTTCAACACACGGTCAGGAATACAGGTATAACGATGGTAATGGTGATATCCGAATCTGGACTTTTCATGGAAAAGCTGATCAAGATGCAGCTAGTGTACTAGTAGACATCGCGGCTAGAAATGGTTTCTATTTACAAAACTCTTATGGTAACGGTCCTGAGTACTGGGATACACGGTATAAGCTTCTAGATACGGCGTATGCTGTTGTTCGTTTCACTATTAATGAAAATAGGACCGAAATTCCAGAAGTTAGCGCTGAACTACAAGGTAAGAAGATTACTGTCTATCAAGCTGACGGCAGTTCTAAATCAGATGCTACTAGTTTGAACGGTATATGGCAAACACTGGACTATCTGACCTCAAATCGTTATGGTGCTAATATCACTATTGATCAGTTCCCTTTACAGCAACTTATACAAGAAGCTGCTATCCTGGACATTGTTGACGAATCTTACCAACAATCCTGGCAGCCTTATTGGAGATACACTGGCTGGACGGATCTTAGTGCTGAGAATAGACAGATGGTTCAGATGAATACTATTCTGGATGGTTCAGAATCAGTGTTTAAAAACGTACAGGAACTACTAGATTCATACAGTGGTGCTATTAACAACTTATCTGGTCAGTACAGAATAACCGTTGAAAAGTTCTCAGATACTCCATTAGAGATTAACTTCTTAGATACCTATGGTGATTTGGAGTTATCAGATACAACTGGTCGAACTAAGTTTAACTCAGTTCAGGCTTCAATTGTAGATCCTGCACTAAGCTGGAAAACCAACTCAATAACATTCTTCAACTCCATGTTTAAAGAGCAAGATAAGGGTCTGGATAAAAAGCTTCAGCTATCTTTTGCCAATATTACTAACTACTATACTGCACGTAGTTTCGCAGATCGAGAACTTAAGAAATCACGTTACTCTCGTACTCTGACTTTCTCTTTACCATATCACTTCATCGGTATTGAGCCTAACGATCCTATCGCATTCACTTATGAACGTTACGGATGGGATAAGAAGTTTTTCTTAGTAGATGAAGTCGAAAACTCTAGAGAAGGCAAGATAAACGTTACTCTGCAAGAGTATGCAGAAGACGTGTTTATTAACTCCGAGCAGGTAGATAATAGTGGTAACGATATACCGGATGTTAGTAATAGCGTTCTACCCCCTAGAGACTTCATGTATACACCTACACCAGGTGGTTTAGTTGGGTCTATAGGTAAAAATGGTGAATTGTCTTGGCTTCCTAGTCTGACTAATAACGTTGTTTACTACTCTATCACTAAATCTGGAAGGACTAATCCATACATCATTCAGCAACTGGAGACTCTGCCAAACGATAGGATGATTCAAGATATTGTTGGTGAAGCACCAGGATTAGTAATCTTTGAGATTCGCGCAGTAGATATTAATGGTAGACGTAGTTCTCCAGTAACTCTTTCTCTGGAACTTAACTCAGCTAAAAACTTGAGCGTTGTTGGAAACTTTAGAGTTCTCAACACAGCTACAGGTGATTCCTCTGAGTTTATAGGGCCAGATGTTAAACTAGCTTGGGATAGGTTAGAGGAAGAGGATCTTATTCAAGGCATCTTCTATACCTTAGAGATACGTGATATAGATCAAAACATGTTGAGAAGTGTTAGAATTGAAGATCAATATGTCTATGACTACTTACTGATTTATAATAAGGCAGATTATGCTTTGTTACACGAAGATGCTTTAGGTATTAACAGAAGACTATTCTTCCGTATCCGAGCAGAGGGTGACAATGGCGAACAGTCTGTGGATTGGGCATCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1fd2681eaeec44aafae6b8c05a3e4345d3325961810e88fcbeaade4c672c0d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8093
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Happonen,L., Butcher,S., Mattinen,L., Nawaz,A. and Skurnik,M. 2021-07-16 — GenBank