Protein

View in Explore
Genbank accession
UXR08204.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPHLKAYDKEGNILAIGYDVKNDQGSVIIPNLSPHTNYPQGEFYVSWEGDNYESEKVVVPEFTTLESSYKEITFYAKDILTVKPKTAYDIAVDNGFTGTEEEWVDSIKGEKGDKLSFNDLTIEDKEELRGEQGLQGVRGDAPNFLNVNAEYDITVFQPIAPNEYNAMRYFRDTSNTDEFMKGYDNYVARYGTSEVTKTIKEDYSAVTKGSMIVLEGNDNPYSLEVGTTIEHTFTGYSISMTANTNTRGGMWKASIDGSFIKNISTFSTGGITTFLISDELENKEHTLVLEFIGQDPDNPVSSPRGWIRTGKYNEYYNTFTILKKENVTGISKVIDVAYPTSNKEYAIAVRPKDSSSSTEFFPYHGVQTSFRGENYVRQLIVDGVDVDLTKKKENIQFKEARLIQKIEHKLSTDTSIRMECTFIVTFKDSKVYNDVRFKWVQPSQITSGYVFQMPFDYNWFSSVVVDSVEQVNQSDEFGTQSDFNNDNAKVYTGFSNDEVGKDYIYQCVINKVSIPVDRLWLQHRDERLQKLYPQYYNATIKEAGDIDVFSGYYEIVKIKDANKVYKL
Physico‐chemical
properties
protein length:567 AA
molecular weight: 64696,19150 Da
isoelectric point:4,83628
aromaticity:0,12698
hydropathy:-0,55855

Domains

Domains [InterPro]
DC_1109
ATT
57–200
DC_1109 G3DSA:2.60.120.260 DC_1117
DC_1309
STR
161–330
DC_1309
UXR08204.1
1 567
Architecture
ATT
STR
RBD
ATT 57-200 | STR 201-330 | RBD 331-565 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UXR08204.1
1 567
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9796
Central domain 148 370 224 0,8015
C-terminal 371 567 196 0,3593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-370
C-terminal
371-567

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC04
[NCBI] 		2983349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus capitis
[NCBI] 		29388 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08204.1 [NCBI]
Genbank nucleotide accession
OP297178.1 [NCBI]
CDS location
range 49769 -> 51472
strand +
CDS
ATGCCACATTTAAAAGCTTATGATAAAGAAGGTAATATACTGGCTATTGGTTATGATGTAAAAAATGACCAAGGTTCAGTTATTATCCCTAACTTATCACCACATACTAATTACCCACAAGGGGAATTTTATGTCTCATGGGAAGGTGATAACTACGAATCAGAAAAAGTAGTAGTTCCTGAATTTACTACATTAGAATCTTCTTATAAAGAAATTACTTTTTATGCTAAAGATATTTTAACAGTTAAACCTAAAACAGCTTATGACATAGCTGTAGACAACGGATTTACCGGTACAGAAGAAGAATGGGTAGATTCTATTAAAGGAGAGAAAGGAGATAAGTTATCCTTTAATGACCTAACAATAGAGGATAAAGAAGAACTAAGAGGGGAACAAGGATTACAAGGTGTTAGAGGTGATGCACCTAACTTTCTTAATGTAAATGCAGAATATGATATCACTGTTTTCCAACCTATAGCACCGAATGAATATAATGCTATGAGATATTTCAGAGATACTTCTAATACAGATGAGTTTATGAAAGGTTATGACAACTACGTAGCTAGATACGGTACGTCAGAAGTTACTAAAACGATAAAAGAAGATTATTCAGCAGTTACTAAAGGTTCAATGATAGTATTGGAAGGAAATGATAATCCATATTCACTTGAGGTAGGTACAACTATTGAACATACTTTTACAGGATATTCAATTTCTATGACAGCCAATACAAATACAAGAGGTGGAATGTGGAAAGCTAGTATTGATGGTAGTTTCATTAAAAATATAAGTACATTTAGTACAGGTGGAATAACAACTTTCTTGATTAGTGACGAACTAGAAAATAAAGAGCATACACTAGTGTTAGAGTTTATCGGTCAAGACCCTGATAATCCTGTATCAAGCCCAAGGGGTTGGATAAGAACAGGTAAATACAATGAATATTACAATACCTTTACTATTCTTAAAAAAGAGAATGTTACAGGTATTAGTAAAGTTATTGACGTAGCTTACCCTACTAGTAATAAAGAATATGCTATTGCAGTTAGACCGAAAGATAGCTCATCTAGTACAGAGTTCTTTCCTTATCATGGTGTGCAAACATCATTTAGAGGTGAAAACTATGTAAGACAATTAATTGTAGATGGCGTAGATGTAGACTTAACTAAAAAGAAAGAAAACATACAGTTTAAAGAGGCAAGATTAATACAAAAAATAGAACATAAATTATCTACTGATACATCTATAAGAATGGAATGTACATTTATTGTTACTTTTAAAGATAGTAAAGTTTACAATGACGTTAGGTTCAAGTGGGTACAACCTAGCCAAATCACAAGTGGTTATGTATTCCAAATGCCTTTTGATTATAATTGGTTTAGCTCAGTGGTTGTTGATTCAGTAGAGCAAGTGAATCAATCAGATGAGTTTGGTACCCAATCAGACTTTAATAATGATAACGCAAAAGTATATACAGGTTTCTCTAATGATGAAGTTGGTAAAGACTACATTTATCAATGTGTAATCAATAAGGTATCTATACCTGTAGATAGACTTTGGTTACAACATAGAGATGAGAGATTACAAAAACTATACCCACAATATTACAATGCCACTATAAAAGAGGCAGGAGATATTGATGTATTTAGTGGTTACTATGAGATTGTAAAAATCAAAGATGCTAATAAGGTATATAAATTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b3d0c376b4eb867ee9b336799b5c7a239e6e20c2f9c2c6294104952a143481c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6087
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis : an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank