Protein

View in Explore
Genbank accession
YP_010064504.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,65
Protein sequence
MGLVSQSVKNLKGGISQQPEILRFSNQGSVQINGWSSEAEGLQKRPPTKFVKFLGPDSMWPGKPAVHLINRDRTEQYFVIFTGSGIAVRDLLGNTYTVRGYNGYANCANPRDDLRMVTVADYTFVVNRNRQVTMAGSLTQPGYPRLDGRAIINVRGGQYGRTLKVAVNVPIESAQATVALPDGSVAAHVNETDAQVIANKIRDQLNASLGPSGWSAQSGPGWVVINAPANDNIRSIATADGYANQLINGFVYQVQSFSKLPSQCVDGYLVEITGEASRTGDNYWVRYDAAGAVWRETVKPGIIAGVEPLSMPHALIRAADGQFDFTPLTWGTRTAGDDKTNPMPSFTESTINDVFFFRNRLGFLSGENVVMSRTAKYFDFFPASVAELSDDDPIDVAISHNRVSILKYAVPFSEQLLLWSDQAQFVLSSSGVLSPKNIQLDLTTEFDVSDNARPFGIGRGVYFASPRASYTSIKRYYAIQDVSNVKSAEDISAHVPSYIPNTVFALHGSGTENFLTVLSDAMRSCVFIYKFLYLDEQVVQQSWSHWDMGDGVEVLCATCIGSFMWMILRRPGGITLERVEFTKDTVDYSSEPWRAYMDMKVQVVPTIYNDDEYLTKLDLRTLYGFAPGEGDFWTLSEDGVFRLHEMPAGGWAADPILKVDGNVTGRNFIVGRAYEFTYGFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYEESGSFQVVVDNGAVQFSYDMAGGRLGSSVAVGEPNAGTGQFKFPITGNAQNQMVYLFSRAPVPVNIIGCGWEGNYLRRSTGV
Physico‐chemical
properties
protein length:794 AA
molecular weight: 87420,27330 Da
isoelectric point:5,31441
aromaticity:0,11209
hydropathy:-0,18463

Domains

Domains [InterPro]
IPR058003
TTP
1–793
IPR058003
YP_010064504.1
1 794
Architecture
TTP
TTP 1-793 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010064504.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9903
Central domain 143 350 209 0,2316
C-terminal 351 794 443 0,1664
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-350
C-terminal
351-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PsyP_3MF5
[NCBI] 		2749426 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010064504.1 [NCBI]
Genbank nucleotide accession
NC_054890 [NCBI]
CDS location
range 24217 -> 26601
strand +
CDS
ATGGGTCTCGTATCGCAATCGGTCAAGAACCTCAAGGGTGGCATCAGTCAACAACCAGAAATCCTACGGTTCTCGAACCAAGGCTCCGTCCAGATCAATGGGTGGTCCTCAGAGGCCGAAGGTCTCCAGAAGCGTCCACCTACCAAGTTCGTCAAGTTCCTTGGGCCTGACTCTATGTGGCCTGGGAAGCCTGCTGTACACCTAATCAACCGTGACCGCACTGAGCAATACTTTGTGATCTTCACAGGCAGTGGGATTGCCGTAAGGGACCTCCTGGGCAACACCTACACAGTCCGTGGGTACAACGGGTATGCCAACTGTGCGAACCCTCGGGATGACCTACGGATGGTCACTGTGGCTGACTACACGTTCGTAGTGAACCGCAACCGTCAGGTGACTATGGCTGGATCGCTTACACAGCCTGGGTATCCACGCCTGGACGGCAGAGCGATCATCAACGTCCGTGGTGGTCAATACGGGCGTACCCTCAAGGTGGCAGTCAATGTCCCCATTGAGTCCGCTCAGGCCACAGTGGCGCTACCAGATGGCTCAGTTGCAGCGCATGTCAACGAAACAGACGCTCAGGTCATCGCCAACAAGATCAGGGACCAACTAAATGCGTCCCTCGGTCCCTCTGGGTGGTCCGCACAGTCCGGCCCAGGGTGGGTGGTCATCAATGCCCCAGCCAATGACAACATCCGGTCTATCGCCACTGCTGATGGCTACGCCAACCAGTTGATTAACGGGTTCGTCTATCAGGTGCAGTCCTTCTCGAAGTTGCCCAGCCAGTGTGTGGACGGGTATCTCGTGGAGATCACTGGGGAAGCCTCCAGGACAGGGGACAACTACTGGGTTCGCTATGACGCCGCTGGGGCTGTCTGGAGGGAGACCGTTAAGCCTGGGATCATCGCAGGGGTCGAACCTCTAAGTATGCCCCATGCGCTCATCCGGGCTGCTGATGGTCAGTTCGATTTTACACCGCTGACCTGGGGAACCCGGACTGCTGGTGACGATAAGACCAACCCAATGCCCAGTTTCACGGAATCCACGATCAACGATGTGTTCTTCTTCCGTAACCGCCTGGGGTTCCTCTCAGGGGAGAACGTGGTGATGAGCCGAACGGCTAAATACTTCGACTTCTTCCCGGCCTCGGTAGCTGAGCTGAGTGATGATGACCCAATCGACGTGGCTATCAGCCATAACCGTGTGTCCATCCTCAAGTACGCTGTGCCCTTCTCGGAGCAGCTCCTATTGTGGAGCGACCAAGCTCAGTTCGTATTGAGCAGCTCTGGGGTCCTGTCGCCTAAGAACATCCAGTTGGACCTCACCACGGAGTTCGATGTGAGTGACAACGCACGTCCTTTCGGGATTGGCCGTGGGGTCTACTTTGCGAGTCCTCGGGCTTCCTACACGTCCATCAAGCGGTACTACGCGATCCAGGATGTGAGCAACGTGAAGTCCGCTGAGGACATCTCGGCGCATGTCCCGAGCTACATCCCCAACACGGTGTTCGCCCTCCACGGGTCAGGCACCGAGAACTTCCTGACGGTCCTCAGTGACGCCATGAGAAGCTGCGTGTTCATCTACAAGTTCCTCTACCTGGACGAACAAGTGGTGCAGCAGTCGTGGAGCCATTGGGATATGGGGGATGGTGTGGAGGTGCTCTGCGCTACCTGCATCGGGTCCTTCATGTGGATGATCCTTCGGCGTCCTGGGGGAATCACCCTGGAGCGTGTCGAGTTCACAAAGGACACTGTGGACTACAGCAGTGAGCCCTGGCGTGCCTACATGGACATGAAGGTGCAGGTAGTCCCTACGATCTACAACGATGATGAGTACCTGACCAAGCTGGACCTACGGACCCTATATGGGTTTGCTCCTGGGGAAGGCGACTTCTGGACACTCTCTGAGGACGGTGTGTTCCGTCTCCATGAGATGCCCGCTGGTGGGTGGGCAGCCGACCCCATCTTAAAGGTGGACGGTAACGTGACCGGCAGGAACTTCATCGTCGGGCGTGCCTACGAGTTCACCTACGGGTTCTCGAAGTTCCTCATTAAGCAGACAGCGGACGATGGCTCCACGAGCACTGAGGACATCGGGAGGCTCCAGCTTCGCCGTGCCTGGGTGAACTACGAGGAGTCCGGGTCCTTCCAGGTCGTAGTGGATAACGGAGCGGTTCAGTTCAGCTACGACATGGCGGGTGGACGCCTTGGGTCCTCAGTGGCCGTAGGCGAGCCAAACGCTGGCACTGGGCAGTTCAAGTTCCCAATCACAGGCAATGCTCAGAACCAGATGGTCTACTTGTTCTCCAGGGCTCCAGTCCCAGTGAACATCATCGGGTGCGGCTGGGAGGGTAACTACCTACGCCGATCCACTGGCGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
212f6bf6d5450669ba4d4ae0a261d9a3eed35d7b41ee269d74d02b2292261823
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3007
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characteristic of a Distant Relative of Teseptimavirus Genus Phages That Acquired the Ability to Lysogenize Its Host Fijalek,A., Gizinski,R., Giermasinska-Buczek,K., Gagala,U., Gawor,J., Kropinski,A.M. and Lobocka,M. 2020 — GenBank