Protein

View in Explore
Genbank accession
YP_007003525.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDTAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAIVDSAPAALDTLNELAAALGNDPNFATTMINALAGKQPLDNTLTNLSGKDVAGLLAYLGLGETINLATGAMQKDQNLNDVPDKALARQSLQLGNSATLNVGTTPDTVAAGDDIRISTAKRAIDDTQTGLGAQPVMWVSTADDLSILPSGARRFASNKAPATILPVNDYVFLEVIAKRDCVDGCAVLITDSVGNTWIGARWDATNDSGFTWRPLMSCPPGVPLPWPSDTIPAGYALMQGQAFDKNVYPLLAIAYPSGTIPDMRGWTIKGKPASGRAVLSQELDGNKSHSHSARAQDTDLGTKGTSSFDYGTKSSNTTGGHNHSAGGTYGGDSIGGKIRVQHDGNDQLTSWNGDHAHTTWIGPHDHTVYIGPHGHVVIVDADGNEETTVKNIAFNYIVRLA
Physico‐chemical
properties
protein length:617 AA
molecular weight: 65025,33500 Da
isoelectric point:5,30913
aromaticity:0,05673
hydropathy:-0,16645

Domains

Domains [InterPro]
IPR022225
ATT
1–150
IPR022225 SSF88874
IPR051934
Unmapped
1–617
IPR051934
DC_1172
STR
1–617
DC_1172
IPR037053
ATT
432–485
IPR037053
IPR011083
ATT
437–484
IPR011083
YP_007003525.1
1 617
Architecture
ATT
STR
ATT
STR
ATT 1-150 | STR 151-431 | ATT 432-485 | STR 486-617
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage RE2010
[NCBI] 		929814 Uroviricota > Caudoviricetes > Peduoviridae > Felsduovirus RE2010 >
Host Salmonella enterica subsp. enterica serovar Enteritidis str. LK5
[NCBI] 		272989 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007003525.1 [NCBI]
Genbank nucleotide accession
NC_019488.1 [NCBI]
CDS location
range 23476 -> 25329
strand +
CDS
ATGAGCGCAAAATTTTATACCCTGCTGACGGAGATCGGCGCGGCGAAACTGGCAAGCGCCGCCGCGCTCGGTGTCCCGCTGAAAATTACCCATATGGCGGTGGGCGACGGTGGCGGTGTGCTGCCCACACCCAGCGCGCAACAGACCGCGTTAGTTGCTGAGAAGCGTCGAGCAGCGCTGAATATGCTGTATATCGACCCGCAGAACAGCAGCCAGATTATTGCTGAGCAAGTGATCCCGGAAACTGAGGGGGGATGGTGGATTCGTGAGGTCGGCCTGTTTGATGAAACCGGCGCACTGATCGCCGTGGGTAACTGCCCTGAGAGCTACAAGCCGCAGCTGACAGAAGGGAGCGGACGTACGCAGACCGTGCGCATGGTACTGATTACCAGCAGCACCGATAACATCACCCTGAAAATTGACACTGCAGTAGTGCTGGCAACCCGTAAATATGTAGATGATAAGGCGCTGGAGCTGAAGGTATATGTAGACGACCTGATGGCAAAGCATCTTGCTGCGCCGGACCCGCATTCACAGTATGCGCAGAAGGACAGCCCTACACTCACAGGGATTCCAAAGGTACCGACGCCAGCGGCGGGTAACAGCACTAAACAGATTGCAAACACGGAATTTGTGGCATCGTCTATCGCGGCAATAGTGGATTCTGCGCCTGCAGCACTGGATACGCTGAACGAGCTGGCAGCGGCTCTGGGGAATGACCCGAACTTTGCCACGACGATGATAAACGCTCTGGCTGGAAAGCAACCGCTGGACAATACACTGACGAATTTAAGCGGAAAAGATGTAGCTGGTCTTCTTGCATACCTCGGTTTAGGCGAAACGATAAATCTGGCCACTGGCGCCATGCAAAAAGACCAGAACTTGAATGATGTGCCAGATAAAGCGCTGGCCCGTCAGTCCCTCCAGCTTGGCAACAGCGCTACACTCAACGTCGGCACCACACCAGACACTGTAGCCGCTGGTGACGACATCCGTATTTCCACCGCCAAAAGAGCTATAGACGACACCCAGACCGGTCTTGGTGCTCAGCCCGTTATGTGGGTAAGTACCGCCGATGATTTGAGCATTCTGCCGTCTGGTGCTCGCCGGTTTGCCAGCAATAAAGCTCCGGCAACAATATTGCCGGTAAACGATTATGTTTTCCTGGAAGTGATTGCCAAACGCGATTGCGTAGACGGCTGCGCCGTTCTGATAACAGACTCAGTTGGTAACACCTGGATTGGCGCGCGCTGGGACGCAACCAATGATTCCGGGTTTACCTGGCGTCCCCTGATGTCGTGTCCGCCCGGCGTTCCCCTTCCGTGGCCGTCTGACACCATCCCTGCTGGTTACGCCCTGATGCAGGGGCAAGCATTTGATAAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGCGCGGCTGGACAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTATCTCAGGAGCTGGATGGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGTACGTCGTCATTTGATTACGGAACGAAGAGCTCTAATACAACAGGCGGTCATAACCATTCGGCGGGCGGCACATACGGTGGTGATTCAATCGGTGGAAAAATTCGCGTCCAGCATGATGGCAATGACCAGTTAACAAGCTGGAATGGCGATCACGCACATACCACATGGATTGGTCCGCATGACCACACTGTATATATCGGCCCACACGGCCACGTCGTTATTGTGGACGCAGACGGTAATGAGGAAACAACGGTTAAAAACATTGCATTTAATTACATAGTGAGGCTTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6a05465fc59eff59ab29bd0e17fa6fa790303f4797fe2c1484b09e5f1f8fb7be
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7313
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the ELPhiS Prophage from Salmonella enterica Serovar Enteritidis Strain LK5 Hanna,L.F., Matthews,T.D., Dinsdale,E.A., Hasty,D. and Edwards,R.A. 2012 22247173 GenBank
High-throughput Identification of Horizontal Gene Transfer: Detection of Viable Phage in Salmonella enterica serovar Enteritidis Farris,L.A., Busch,J., Cassman,N., Dinsdale,E., Hasty,D. and Edwards,R. 2012-03-15 — GenBank