Protein

View in Explore
Genbank accession
BDA81525.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MVIQFSPLTKDNNVKDLSETVNSIGAELTKSNNIFTQVDSMSKTLQNVQQFTLTNKDGYSKVPGSLKSIRELREAGYYYISASTLATLSDAPPVNSDVVITVMPSSTKDYCIQYLHTLRASINPRALFRYATPSMSTEWLSVVTTPLTMNTTISDKDLNKDVIDVGTYYFYNLKGVPTGITRGFLDVRKGQNDLTIYEITNASTALKYTSIFSPDTGLSSWVEETTLDNINDYTLAGKEDNYTYPRFGLYIYKSDNISFGDAVQKKLKETNQGSFTFYCQGGVPDAPSQYSTRGLFISDTPKDSGSATNHGVYYAIETSGKLVTGALASDKWSTPKKAPSIDTLWTGNKLFTDTSKTEKLSAPITDYDYVEIFIKPRVTTNSSGDVWDVVNNEGRRFYIGNDTFFIVSGTIVDSKAKTIGVDHYRVDIRFDGDTFKVDGSATINKKAHYVTRIVGHRV
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50836,29280 Da
isoelectric point:6,25714
aromaticity:0,10917
hydropathy:-0,37031

Domains

Domains [InterPro]
DC_1773
STR
10–246
DC_1773 IPR057110
DC_0448
STR
193–458
DC_0448
BDA81525.1
1 458
Architecture
STR
STR 10-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDA81525.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 263 263 0,8455
Central domain 264 447 185 0,0437
C-terminal 448 458 10 0,9935
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-263
Central
264-447
C-terminal
448-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SsapH-Golestan-100
[NCBI] 		2870751 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDA81525.1 [NCBI]
Genbank nucleotide accession
LC647030.1 [NCBI]
CDS location
range 49916 -> 51292
strand +
CDS
ATGGTAATACAATTTTCACCATTAACAAAAGACAATAATGTAAAAGACCTTTCAGAAACAGTTAATAGTATTGGAGCTGAGCTAACTAAGAGTAATAACATATTTACTCAAGTTGATTCTATGTCCAAGACTTTGCAAAATGTTCAACAATTTACATTAACTAATAAGGATGGCTATTCTAAAGTACCAGGTTCTTTGAAAAGTATCAGAGAATTGAGAGAGGCAGGTTATTACTATATATCTGCTTCTACTCTTGCTACTTTATCAGATGCCCCACCCGTTAACTCTGATGTTGTAATTACTGTAATGCCTTCTTCAACAAAAGATTATTGCATACAGTACTTACATACGCTAAGAGCATCTATTAATCCTAGGGCATTGTTTAGATACGCTACTCCTTCAATGTCTACAGAGTGGTTATCCGTAGTTACAACACCGTTAACTATGAATACTACCATAAGTGATAAAGACTTAAACAAAGACGTTATAGATGTTGGAACTTATTACTTTTATAACCTTAAAGGCGTCCCAACAGGTATAACACGAGGGTTTTTAGATGTAAGGAAAGGGCAAAATGACTTAACTATATATGAGATTACTAATGCTTCTACAGCTTTGAAATATACATCAATATTTTCACCTGACACAGGACTTTCTAGTTGGGTAGAGGAGACTACATTAGATAATATAAATGACTATACTTTAGCAGGTAAGGAAGATAACTATACGTACCCTAGATTTGGACTATATATTTATAAATCAGATAACATATCCTTTGGGGATGCTGTACAGAAGAAGTTAAAAGAAACTAACCAAGGGTCTTTCACTTTCTATTGCCAAGGAGGAGTACCCGATGCTCCTAGCCAGTATTCAACACGAGGGTTATTCATTTCTGATACACCTAAAGACTCAGGCTCTGCAACTAATCATGGTGTATACTACGCTATTGAGACTAGTGGTAAGTTGGTAACAGGAGCTTTGGCTAGTGATAAATGGTCTACGCCAAAGAAAGCTCCCTCTATAGATACCTTATGGACAGGTAATAAGTTATTTACAGATACAAGTAAGACTGAAAAGTTATCAGCACCTATTACAGACTATGATTATGTAGAGATTTTTATTAAGCCTAGAGTAACAACTAACTCCTCAGGAGACGTATGGGACGTAGTAAACAATGAAGGTCGTAGGTTCTATATAGGTAATGATACCTTCTTTATCGTTTCAGGAACGATTGTAGACTCTAAAGCTAAGACTATAGGTGTTGACCATTATAGAGTGGACATCAGATTCGATGGAGATACTTTTAAAGTAGATGGTTCTGCTACTATAAACAAAAAAGCACATTATGTAACTAGAATCGTTGGTCATAGAGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
49e5c5d202442aaa2cc23c01af5a4ae306b6f2aef815278ddefa3475c6ed06c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7616
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of phage genome Yazdi,M., Ghaemi,E.A., Shirzad-Aski,H., Mohebbi,A., Tabarraei,A., Sabzali,S. and Rafiee,M. 2013-08-01 — GenBank