Protein

View in Explore
Genbank accession
QCG76007.1 [GenBank]
Protein name
baseplate wedge subunit and tail pin
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,71
Protein sequence
MSYNISKSNGTPITVADQTILENYTLPLLGKDISPYGGEIAQSTIRHLENFANTIPPRGAIKGQLWYDTQQEILKVWKGADPLSPNDNTSADRSNEMWTPIGGALIQDLLPKVDNTINIGSPTLRFKNIYAVGFFGTEATLRKCTSSSNRTALTVVGNTSVQGDILPETQSTMPNPCQFITSSSLGSSAKQWDNLYTKKAWINSGGITFTNGSSVIALENGPNNDLFCRGTWIIGGTSYRVTRFFGQDVNTTLLTLGTGTNQGLNSHLMPVIDNTYDLGSTARRYRNMYSVNFVGNASSATNATRAASADKWTFGRTLTLTGNVLGSVVLDGTANVTMNTTVVGLGTAASHDVIAPGVPGNMANKIPVVSTSGVTEIARYLDFHHATNSSTDYDVRLHTDGVNDGALYINGQRIWHTGNLPTVYTQDQVDQKILTAIAATRELVYPIGSVYINATNSANPATYLGFGVWNPYAQGRSIVGNGSTTDANGDSGGYAAGSTGGTYFHKLTVAEMPAHQHIQGFGNNVSQSGRFGSVGGQSARVEDGYGFQSVTTAPLTSSVGGDGKHNNQSPWQCAYVWIRVG
Physico‐chemical
properties
protein length:581 AA
molecular weight: 61981,08780 Da
isoelectric point:6,59516
aromaticity:0,08606
hydropathy:-0,26540

Domains

Domains [InterPro]
DC_0383
STR
40–581
DC_0383
IPR053827
ATT
442–580
IPR053827
SSF88874
STR
445–578
SSF88874
QCG76007.1
1 581
Architecture
STR
ATT
STR 40-441 | ATT 442-581
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCG76007.1
1 581
Domain Start End Length (AA) Confidence
N-terminal 1 331 331 0,4123
Central domain 332 530 200 0,1203
C-terminal 531 581 50 0,9992
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-331
Central
332-530
C-terminal
531-581

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCG76007.1 [NCBI]
Genbank nucleotide accession
MK797984 [NCBI]
CDS location
range 47121 -> 48866
strand -
CDS
ATGTCATATAATATTTCCAAAAGTAACGGCACCCCTATTACTGTTGCAGACCAAACGATATTAGAGAATTATACTTTGCCATTACTAGGCAAAGACATATCACCGTATGGCGGAGAAATAGCACAGAGTACAATTAGGCATTTAGAAAATTTTGCCAATACAATTCCGCCTCGGGGGGCCATTAAGGGCCAACTGTGGTATGATACTCAGCAGGAAATACTTAAAGTATGGAAAGGAGCAGACCCTTTATCTCCTAACGATAACACTAGTGCAGATAGATCTAACGAAATGTGGACTCCTATTGGCGGAGCATTAATACAAGATCTATTGCCAAAGGTTGATAATACAATTAATATAGGGTCTCCTACCCTTAGATTTAAAAATATCTATGCAGTGGGCTTTTTCGGAACAGAAGCAACTTTAAGAAAATGTACATCTAGTTCTAACAGAACTGCTCTTACAGTTGTAGGAAATACTTCAGTTCAAGGCGACATATTACCCGAAACCCAATCGACTATGCCGAATCCTTGTCAGTTTATAACATCGTCTAGTTTGGGTTCGTCTGCAAAACAATGGGATAATTTATATACAAAGAAAGCATGGATTAACTCTGGTGGCATAACTTTTACTAATGGTTCTTCTGTTATAGCATTAGAAAACGGACCTAATAACGATTTATTCTGTAGGGGTACATGGATTATAGGTGGTACTTCATATAGAGTAACAAGATTCTTCGGCCAAGATGTAAATACGACGTTATTAACACTAGGAACTGGCACAAATCAAGGTTTAAATTCTCATTTGATGCCTGTAATAGATAATACGTATGACTTAGGTTCTACTGCTCGGCGCTATAGAAACATGTATTCTGTAAATTTCGTAGGTAATGCATCAAGTGCGACTAATGCAACTAGAGCAGCTTCTGCAGATAAATGGACGTTTGGTAGAACATTAACACTAACTGGAAATGTTTTAGGTTCAGTAGTATTAGACGGTACTGCAAACGTTACAATGAACACAACTGTAGTTGGATTAGGCACAGCAGCGTCACACGATGTTATAGCACCCGGTGTTCCTGGAAATATGGCTAACAAGATTCCCGTTGTTAGTACATCTGGTGTTACAGAAATAGCTAGGTATTTAGATTTTCATCATGCCACGAACTCTTCTACTGATTACGATGTTCGACTGCATACAGATGGCGTCAATGACGGCGCACTATATATAAATGGTCAAAGAATATGGCATACTGGCAATCTTCCTACAGTTTATACCCAAGACCAAGTAGATCAGAAAATTTTAACTGCCATTGCAGCTACTAGAGAATTAGTATATCCTATAGGTTCTGTATACATTAACGCAACTAATTCGGCAAACCCAGCAACTTATTTAGGGTTCGGGGTCTGGAATCCGTATGCACAGGGCAGATCTATAGTCGGGAACGGATCTACTACTGATGCAAATGGAGATTCGGGTGGATATGCTGCTGGATCAACGGGAGGAACTTATTTCCATAAACTTACTGTAGCAGAGATGCCAGCGCATCAGCATATACAAGGTTTCGGAAATAACGTTTCGCAATCGGGTAGATTCGGTTCAGTCGGAGGTCAATCTGCTAGGGTCGAAGACGGTTACGGATTCCAGAGCGTTACTACAGCGCCTCTAACTTCTTCTGTCGGCGGCGACGGAAAACATAATAACCAATCTCCGTGGCAATGTGCATACGTATGGATTAGGGTAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
886b767558e135ab92ef4350bca5edc1065f8b8ae2d5991d3215780549c5f7c2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5993
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 32154616 GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank