Protein

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Genbank accession
AGN12239.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MANIKKTFNFRNGVQVDDDNLIVNQTGLVGIGTTVPTEALDVRGKVKVLVDPNVAGSGEINATTGIITSLTVTNLTVSGNNYSGGVIGVGISVGTAGIITATEPTGIVTYYGDGKELLNLPTSQWLDKDVGLGYTSIYAQGGVGVGTVDPRFTFQVSGNNDLTNFEEGVGINDKGGIVATGVITATTFKGHVDGSVSSGLSTITQLQSTNANVTGVVTATEFKGDVTGDVVSGVSTITTLQSTTINAGLINATGAGFTGALSGDVTGNVTGNVNGNINAVTGISTLNILKILGTIDGDTVSGILTTGRLTAATSTIGVATAASLNVQGKLGVGINNPIGDIQVYKSGISTVNVVGEEFAVLQLGQRDSIGIGASTAQFKFGETSQELDIINGDPGSINSIIHGGGSAGINTGSFNWIYGVNNSTLMSLDYTGKLGVNKPDPEYPLDVSGIGTFSSDVYVRNSLDVGVLLTVGGNATVAGTLGVTSSVTVGGDLTVTGVFNYPSDIPADKLPEEIDVRISSAGVSTFLGGVNLGAVQIGGGNGVISGVSTIGILTSAENIPLAMGVYSPTAKAVFNRLGVGNTDPINALDVTGTIQATQYLGVGNQPIGAAVDFSNAGRGLTVPSLQNRNFMLPPKVTTTERSNLAGLAAGAIIYNTTTNKLQVYNGSSWQNLH
Physico‐chemical
properties
protein length:673 AA
molecular weight: 68086,25880 Da
isoelectric point:4,50758
aromaticity:0,05349
hydropathy:0,18321

Domains

Domains [InterPro]
DC_0841
STR
2–140
DC_0841 DC_0326
IPR059888
RBD
629–672
IPR059888
AGN12239.1
1 673
Architecture
STR
STR
STR 2-140 | STR 500-673
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12239.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 448 448 0,7122
Central domain 449 647 200 0,5205
C-terminal 648 673 25 0,9922
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-448
Central
449-647
C-terminal
648-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12239.1 [NCBI]
Genbank nucleotide accession
HQ632825 [NCBI]
CDS location
range 50675 -> 52696
strand -
CDS
ATGGCTAATATTAAGAAGACATTTAATTTCCGTAATGGTGTTCAGGTTGATGATGATAATCTGATCGTAAACCAAACGGGTCTGGTTGGTATCGGAACTACTGTTCCAACTGAGGCTTTGGATGTCCGAGGAAAAGTTAAAGTTCTTGTAGACCCTAATGTTGCTGGATCTGGAGAGATTAATGCAACTACAGGTATAATTACATCTTTAACTGTAACCAATTTAACCGTTAGTGGAAATAATTATTCTGGTGGTGTAATTGGTGTTGGTATTAGTGTTGGAACAGCAGGTATTATAACTGCAACAGAACCAACTGGTATTGTTACTTATTATGGTGATGGTAAAGAATTATTGAATCTTCCCACATCACAGTGGTTAGATAAAGACGTAGGATTAGGATATACAAGTATATACGCTCAAGGTGGCGTAGGTGTGGGGACAGTAGATCCTCGATTTACCTTCCAAGTTAGTGGAAATAATGACTTAACTAACTTTGAAGAAGGTGTAGGTATTAATGATAAGGGTGGTATTGTAGCGACAGGTGTTATTACTGCTACTACCTTTAAAGGACATGTTGATGGATCTGTATCTAGTGGATTATCAACTATTACACAGTTACAGTCTACAAATGCAAATGTTACTGGTGTAGTTACTGCTACTGAATTTAAAGGAGATGTTACTGGTGATGTAGTTAGTGGTGTATCAACAATCACTACCTTACAATCAACCACGATAAATGCAGGTCTTATAAACGCTACTGGTGCAGGATTTACTGGTGCTTTATCGGGTGATGTTACTGGTAATGTTACTGGTAATGTTAATGGTAATATTAATGCGGTAACAGGTATTTCAACACTTAATATACTTAAGATACTTGGAACTATTGATGGTGATACTGTTTCTGGTATTCTTACTACTGGAAGATTAACTGCTGCTACTTCAACTATAGGTGTGGCAACAGCAGCATCATTAAATGTTCAAGGTAAATTGGGAGTTGGTATCAATAACCCAATAGGTGATATTCAGGTATATAAGTCAGGAATTTCTACTGTTAATGTTGTTGGTGAAGAGTTTGCTGTTCTACAATTAGGTCAGAGAGATTCGATTGGTATTGGAGCAAGCACAGCACAGTTTAAGTTTGGTGAAACTAGTCAAGAACTTGATATTATTAATGGAGATCCTGGTAGCATCAATAGTATTATTCATGGTGGTGGATCTGCTGGTATTAATACTGGATCATTTAACTGGATATATGGTGTAAATAACAGCACACTAATGTCACTAGACTATACTGGAAAGTTGGGTGTTAATAAACCTGATCCAGAATATCCTTTAGATGTAAGTGGTATTGGAACATTCTCAAGTGATGTTTATGTAAGAAATTCTTTAGATGTTGGTGTTTTACTGACTGTTGGTGGTAATGCAACTGTTGCTGGAACATTAGGAGTTACTAGTAGTGTGACTGTTGGTGGAGATTTGACGGTTACTGGAGTATTTAATTATCCTTCAGATATTCCTGCCGATAAATTACCAGAAGAAATTGATGTTAGAATATCTTCTGCTGGAGTATCTACATTCTTAGGTGGTGTTAATCTTGGAGCAGTTCAAATTGGTGGAGGAAATGGAGTTATCTCTGGTGTATCCACGATTGGAATCTTAACTTCTGCGGAAAATATTCCATTAGCTATGGGTGTTTATTCACCAACAGCAAAGGCAGTTTTCAATAGACTGGGTGTTGGTAATACTGATCCTATAAATGCGTTGGATGTTACTGGTACTATTCAAGCAACTCAATATCTTGGAGTTGGTAATCAACCAATAGGTGCTGCGGTTGACTTCTCTAATGCTGGTAGGGGACTTACTGTACCATCTTTACAGAATAGAAACTTTATGCTCCCACCAAAAGTTACTACAACTGAGAGAAGTAACTTAGCAGGATTAGCTGCTGGTGCAATAATATACAATACTACTACAAACAAACTTCAAGTTTATAATGGATCTTCGTGGCAGAACCTTCACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b873b75df605c221de3f3d6bb063aa364a1c4072144408a0bc5af59387a9e018
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5452
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank