Protein

View in Explore
Genbank accession
YP_010678898.1 [GenBank]
Protein name
YomR-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGYELRLSNNYYQNRELTSFPSYQEVVSDWSKATSVNLYDAWEGKAIGGVTAGWSATSILSYTRTPDPISTNAASLYSYALYMDQVSDFNITIKISSSSIRNNRLGLCVAGQKGKYISAVRSLGNTSSSGSGRNWELILDNNKTRTILSSKTIGINSPAGATSTSSTGYLGWSNRYTIINVIRENNKITAKCSDWNSNVILDNSVFTIDLNDDTLTDFKTSALFGFVSGNQDLCTFEVLSFSAKCYNKIPGLNVPDNYISSNLLSISMPGYNSAGYEKAFSESMIWMVENFASSSPPQNAIKGQLWYKTEGPGTQGSFYVYVGEPGEFTNLAKWHPLTQGTLDLLSAHINDKNDPHQVTKEQIGLGLVDNVNTFDKTLNLADVLNKAAARNNLSIYGKNETYNSQEYNNLFVDKSNSSSPDSELLGGLDSTAYVKKQTPFVTSSITSSVTSGDVIVMNDNSFRLAYKPNYGTSLILGGTVTDIHSQNNTTAVSMNMVTNNTLDNGIQFVFYDAGAINTPLVANSIISFKADNLYIGSGNLAFHDRRPPTAAEVGALAWNGTAVDSYLLNGKINSTSPGANTIAVRYTPSNLPDANGGYLSASSFSMTYTNADPMSVNAQVTFRNNNTNDNYVRFASRDQLVTYLGYDWKVEIDMPKGLASFSDTNLTGGSFFVINTLNLSITKLGTGLYRFYFTTLRPTNTNYAVMTQCMSEGHVGAIEGDVVNYSKAFRAVSIYCYNKTLSYFDVASTLNSNFNNNDGTGYQDYSREYDDPGLASLQVYFSSWVNL
Physico‐chemical
properties
protein length:787 AA
molecular weight: 86081,40350 Da
isoelectric point:5,15856
aromaticity:0,11309
hydropathy:-0,28704

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010678898.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 32 32 0,6884
Central domain 33 231 200 0,4961
C-terminal 232 787 555 0,4267
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-32
Central
33-231
C-terminal
232-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010678898.1 [NCBI]
Genbank nucleotide accession
NC_071039 [NCBI]
CDS location
range 100559 -> 102922
strand -
CDS
ATGGGTTACGAATTACGTTTATCAAATAATTATTACCAAAATAGAGAACTAACTTCTTTTCCTAGTTACCAAGAAGTTGTTTCCGATTGGTCAAAAGCTACATCAGTTAACTTGTATGATGCATGGGAAGGAAAAGCAATAGGCGGCGTCACTGCAGGATGGTCAGCTACTTCTATTCTTTCTTACACAAGAACTCCTGATCCTATATCAACTAATGCAGCATCGTTATATAGCTATGCGTTATACATGGATCAAGTTAGTGATTTTAATATTACAATAAAAATATCTAGCAGTTCTATAAGAAATAACAGGTTAGGTTTGTGTGTTGCTGGACAAAAAGGAAAATATATATCTGCTGTCCGGTCATTAGGTAATACATCCAGCAGTGGATCTGGAAGGAATTGGGAACTAATTTTAGATAACAATAAAACCAGAACGATTCTTTCTAGTAAAACAATAGGAATTAATAGTCCTGCTGGGGCTACTTCTACATCATCTACAGGATATCTCGGTTGGTCAAATAGATATACAATTATTAATGTAATTAGAGAAAATAATAAAATAACAGCTAAGTGTTCCGACTGGAATTCTAACGTAATATTAGATAACTCAGTGTTTACTATAGATCTAAACGATGATACACTAACTGATTTTAAAACATCTGCATTATTTGGATTTGTATCAGGTAATCAGGATTTATGTACTTTCGAAGTATTATCTTTTTCTGCAAAGTGCTATAACAAGATTCCAGGATTAAATGTACCCGATAACTATATTTCTTCTAACTTACTTTCTATATCTATGCCAGGATATAATTCGGCAGGTTACGAAAAAGCATTTAGTGAATCCATGATATGGATGGTAGAAAACTTTGCTAGTTCTTCTCCTCCCCAAAATGCTATAAAAGGACAACTATGGTATAAAACAGAAGGACCCGGTACACAAGGATCATTTTATGTATATGTAGGAGAACCTGGCGAATTTACAAATCTAGCAAAATGGCATCCATTAACTCAGGGCACATTAGATTTACTTAGTGCTCACATTAATGATAAAAACGACCCTCATCAAGTTACAAAAGAACAGATAGGGCTAGGGTTAGTAGATAACGTAAATACATTCGATAAAACACTGAACCTAGCAGATGTTTTAAATAAGGCAGCCGCTAGAAATAATTTATCTATATATGGTAAAAACGAAACATACAATTCCCAAGAATATAATAATCTATTCGTAGATAAATCAAATAGTTCTTCTCCAGATTCAGAATTACTAGGCGGGTTAGATAGCACAGCTTACGTTAAAAAACAAACACCGTTTGTTACTTCGTCTATAACTTCATCTGTTACATCAGGAGATGTAATAGTAATGAATGATAATAGTTTCAGATTAGCATATAAACCTAATTATGGAACTAGTCTAATACTAGGCGGTACTGTTACAGATATTCATTCTCAAAATAATACTACTGCTGTTAGTATGAATATGGTTACTAACAATACATTAGATAACGGAATACAGTTTGTCTTCTATGATGCTGGTGCAATAAATACCCCATTAGTAGCAAATAGTATCATATCATTTAAAGCAGACAATCTATATATAGGTTCTGGTAATTTAGCATTCCACGACAGACGGCCGCCGACTGCTGCCGAAGTAGGAGCGTTGGCGTGGAACGGTACTGCCGTAGATTCATATTTACTTAACGGTAAAATAAATTCAACTAGTCCGGGTGCCAACACAATAGCAGTAAGATATACGCCTTCTAATCTTCCTGATGCAAACGGCGGGTATCTATCTGCATCTTCATTTAGTATGACATACACTAATGCAGACCCTATGTCAGTAAATGCCCAAGTAACATTTAGAAACAATAATACTAATGACAATTATGTTCGTTTTGCTAGCAGGGACCAATTAGTAACTTATTTAGGATATGACTGGAAAGTAGAAATAGATATGCCAAAAGGTCTAGCATCATTCTCAGACACAAATCTTACGGGCGGCTCCTTCTTTGTAATAAACACTTTAAACTTATCTATAACAAAATTAGGAACAGGATTATATAGATTCTATTTTACTACTTTGCGTCCAACAAATACAAATTATGCTGTTATGACACAATGTATGTCAGAGGGGCATGTAGGTGCCATAGAGGGAGATGTTGTTAACTATTCTAAAGCATTTAGAGCAGTGTCTATATATTGCTATAACAAAACATTATCATACTTTGACGTTGCTAGTACATTAAACAGTAACTTTAATAACAACGACGGAACCGGTTATCAAGATTATTCGAGGGAATATGACGATCCGGGATTAGCATCATTACAAGTATATTTTTCATCCTGGGTAAATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c77d60d84b0e1259e421cf26ca8790434412bed5633d8f11ac7d8b8ef024860b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2856
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 — GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank