Protein

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Genbank accession
QDH94159.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANTTITQFPTGQTQYKINFDYLARTFVVVTLINSADQADNKVLTVGNDYRFITATTIELLADQTGFDIVQIHRFTGTGLLVSFRDGSVLTANDLTTSELQAIHIAEEGRDQTSGLAKQYADQAIAAGTDAQSILDNIIKMGKNGYTPVGSFEAGATVNLQNDAVQFGTGAAITHWRWEGTLPKVVPPNSTPTSTGGIGHGKWIDVTDATLRGALAQLTGASLVMTSNGKTVEERLSGTLRVVDSVKDLESLVPQQDGEIVIARWAAYPKLVGVNCGPVGGGMFIAYNDNPAVPKDGGFFVDSPSPTLKWRRMAENTGYYPVAWWGVIPDHYTDNADNITRAHNFAKRAWRVLQYDFGTYLTSKAVPIYSRMGIKGTGRADGTVIAKTTNDAFNLLKADGTVGEAVDALAVMVPDAYDRASPYMDSFCIHGRIEDIMFKRNGLSEANYNTMRPQYGLFMNKGGSPVLKHTNFEGAYIGIRAYVCFSSTISAVATTNWRGKGYAGLYIEDYRDGSLMSSGTSNDIRLFQSRGYQHGVSMSRMQYTTMINCSVEECFKSPGETYAYAYKFIDPFSIHLSTCATEFVEGGQIQITGFANPGFRPSITITEYFAVDQQNPATAHNIIDIDNGGVARCTVKVIGGDWTHDPRTPNVGSPRAAGSGTVVTTIGTTGAEGPNWLLSGGAKVVDIENATNTRSS
Physico‐chemical
properties
protein length:696 AA
molecular weight: 75221,48890 Da
isoelectric point:5,70376
aromaticity:0,09626
hydropathy:-0,19871

Domains

Domains [InterPro]
DC_0369
STR
1–696
DC_0369
IPR005604
ATT
12–114
IPR005604 G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
150–208
IPR040775 IPR011050
QDH94159.1
1 696
Architecture
STR
ATT
STR
ATT
STR
STR 1-11 | ATT 12-114 | STR 115-145 | ATT 146-217 | STR 218-696
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH94159.1
1 696
Domain Start End Length (AA) Confidence
N-terminal 1 334 334 0,9951
Central domain 335 685 352 0,9933
C-terminal 686 696 10 0,4687
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-334
Central
335-685
C-terminal
686-696

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoP-Ro103C3lw
[NCBI] 		2591410 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH94159.1 [NCBI]
Genbank nucleotide accession
MN067430.1 [NCBI]
CDS location
range 33241 -> 35331
strand +
CDS
ATGGCTAATACCACTATTACGCAGTTCCCTACTGGGCAGACTCAGTACAAGATTAACTTTGACTATCTGGCCCGGACCTTCGTGGTGGTCACTTTAATCAACAGTGCTGACCAAGCGGACAACAAGGTCCTGACGGTAGGTAATGACTATCGGTTCATCACTGCCACGACTATTGAGCTTCTGGCCGACCAGACGGGCTTCGATATTGTCCAGATTCACCGCTTCACGGGGACCGGACTTCTGGTCAGCTTCCGTGACGGCTCGGTCCTGACTGCCAACGACTTAACCACGTCCGAGCTTCAGGCTATCCATATCGCCGAGGAGGGCCGAGACCAGACTTCAGGTCTTGCCAAGCAGTATGCGGACCAAGCGATTGCTGCTGGTACTGACGCTCAGTCTATCTTAGACAACATCATCAAGATGGGAAAGAACGGTTACACTCCAGTTGGCTCCTTTGAGGCCGGGGCGACCGTCAACCTTCAGAATGACGCTGTTCAGTTTGGCACTGGTGCTGCTATTACTCACTGGCGCTGGGAAGGCACACTACCTAAAGTCGTTCCACCTAACTCGACACCAACGTCTACTGGTGGTATCGGTCACGGTAAGTGGATTGACGTAACGGACGCGACTCTGCGTGGTGCGCTGGCTCAACTGACTGGTGCCTCTCTGGTCATGACCTCTAACGGTAAGACCGTGGAGGAGCGCCTGTCTGGGACCTTACGTGTCGTGGACTCGGTGAAGGACTTGGAGTCGCTGGTTCCGCAGCAGGACGGTGAGATTGTCATCGCTCGTTGGGCTGCTTATCCGAAGCTGGTGGGCGTCAACTGTGGTCCGGTGGGCGGCGGTATGTTCATCGCCTACAACGACAATCCGGCAGTCCCTAAAGATGGTGGCTTCTTTGTGGACAGTCCGTCTCCGACCCTTAAGTGGCGACGTATGGCTGAGAACACAGGCTATTATCCGGTTGCTTGGTGGGGCGTAATTCCTGATCACTATACCGATAACGCTGACAACATCACTCGTGCGCACAACTTTGCGAAGCGAGCTTGGCGTGTTCTTCAGTACGACTTCGGTACATACCTGACGTCCAAGGCTGTTCCAATCTACAGTCGCATGGGCATCAAGGGGACCGGACGTGCTGACGGTACTGTCATTGCCAAGACCACGAACGATGCGTTCAACCTGCTCAAAGCTGACGGCACTGTAGGTGAGGCCGTGGATGCTCTGGCAGTAATGGTCCCTGATGCTTACGACCGAGCGTCTCCTTACATGGACAGCTTCTGTATCCACGGACGTATCGAGGACATTATGTTTAAACGTAATGGTCTCTCAGAGGCTAACTACAACACCATGCGTCCTCAGTATGGTCTGTTCATGAACAAGGGTGGCTCACCTGTCCTCAAGCATACCAACTTCGAGGGTGCGTATATCGGCATTCGAGCCTACGTGTGCTTCTCGTCAACCATCTCTGCGGTCGCCACAACCAACTGGCGCGGCAAGGGTTACGCTGGTCTTTATATTGAGGACTACCGTGATGGCAGCTTGATGTCTTCAGGCACGAGTAATGACATCCGTCTGTTCCAATCCCGAGGGTATCAGCATGGGGTAAGCATGTCCCGTATGCAGTACACCACGATGATCAACTGCTCTGTAGAGGAGTGCTTCAAGTCTCCGGGTGAAACTTACGCTTACGCCTATAAGTTCATCGACCCGTTCTCTATTCATCTCTCCACCTGCGCGACTGAGTTCGTTGAAGGCGGTCAGATTCAGATTACAGGCTTCGCTAACCCCGGATTCAGACCGTCCATCACTATCACCGAATACTTTGCGGTTGACCAGCAGAACCCTGCTACGGCCCACAATATCATCGACATTGATAATGGTGGTGTTGCACGGTGTACGGTCAAGGTTATTGGTGGTGACTGGACGCATGACCCTCGCACACCTAACGTGGGTTCCCCTAGAGCTGCTGGTTCTGGGACTGTAGTCACTACTATCGGGACCACTGGCGCTGAAGGTCCTAACTGGCTGCTGAGCGGTGGTGCTAAAGTGGTTGACATCGAGAACGCTACGAACACACGGAGTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f154b4d191620585bcca2ce15e7771ea873611f44b78cbba9353d756265de439
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8327
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence of coliphage lytic against STEC O103 isolated from non-fecal compost Liao,Y.-T., Zhang,Y., Lavenburg,V.M., Salvador,A. and Wu,V.C. 2019-02-28 — GenBank