Protein

View in Explore
Genbank accession
ATN93911.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MAMKDFYFVDRSSWHLLGIATAGGGGKIHIVDDTDNQLISAGARTYSGTILFTPELSSKVQTMAARGNYILYMDERNKAVFMTIMESSHDPLAGEETFTAEDAGIDLINETVGPYKAPQAMGIADYIKLFTNDSGFEISLNEIPDLKRTLEWTGESDTTLNRILSVATQFDNAELDFSFDVSGTTVVRRLINIHQRIGADRNITLYVDKDINKIVTSGSIYDLYTAVTPTGGTPESKNGETADQQPITLQGYQWTDPDGRYVLTKEGVLLDPVANQTWSRLLAKGGAPSVNAAYINRVVTYTATSQATLLQSALSDLKAHNHEAVNYETDIAVLPQNINIGDTIHLADENEQLYLSARLLELKSSYSMDTHTATLGDYLIEHDQVAAQYRQLAEQIKNIPKTIQYYPWLRYADDDKGTNMSALPAGKKYMAVVYSNKSSVPSDDPADYAGKWALIQGPKGDTGVGVPGPKGADGRTAYAHFAYANSQDGKADFSTTDSNRKYIGFYSDFTSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGRTPYFHIAYADSSDGRVNFSLDTPGSRKYIGSYTDFTQADSANPATYSWQLVQGPKGSDGKGSYTHVAYANSIDGKTDFSTTNGNGKMYLGIYVDQTQAESTDPAKYSWALFKGTDGRDGKDGSDNVPVITVGAAYPSGPKKGDMHWLTDSSGVVTGYYTYDGTKWNPYKIDAKILSAETFNGMTFNGVTFTGSKFISSFKGVKPDGVADYTVHGTTTMADGKIVTDTYSDTDNSQVTHTELSQFGLLSQIYNKGTLMDSAQLSLGMLTLSGNYQTASNKPLEWITSSLDALRVLQLTNNNLLVWHGAFYPAQADTATISTPLSKTLSGWLIAWSYYQNGAPTYNNYAFTLIPKAALIYNTTGANYLRVTFTMKNVGTIFKVIWYDDTHIIGADENKGGSLAQAVMTEVYAV
Physico‐chemical
properties
protein length:957 AA
molecular weight: 104174,30850 Da
isoelectric point:4,95417
aromaticity:0,10658
hydropathy:-0,38056

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LJ
[NCBI] 		2041454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus casei W56
[NCBI] 		1215914 Bacillota > Bacilli > Lactobacillales > Lactobacillaceae > Lacticaseibacillus > Lacticaseibacillus casei

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN93911.1 [NCBI]
Genbank nucleotide accession
MF999224.1 [NCBI]
CDS location
range 32275 -> 35148
strand +
CDS
ATGGCTATGAAAGATTTTTATTTTGTGGATAGATCATCATGGCACTTGCTCGGTATTGCAACTGCTGGCGGTGGTGGGAAAATCCACATTGTCGATGATACTGATAATCAGCTTATCTCAGCAGGTGCTCGCACCTATTCAGGAACCATTCTGTTCACTCCTGAACTGTCTTCTAAGGTTCAAACGATGGCAGCACGTGGCAATTACATTTTGTATATGGATGAGCGAAATAAGGCAGTCTTTATGACAATTATGGAATCAAGTCATGATCCGCTTGCTGGCGAGGAGACATTCACTGCTGAAGATGCTGGTATTGATTTGATTAACGAAACCGTTGGCCCCTATAAAGCTCCACAAGCAATGGGGATTGCTGATTATATTAAGCTGTTCACGAATGACTCAGGTTTTGAAATCAGTCTTAACGAGATCCCTGATTTGAAGCGAACGCTTGAATGGACTGGCGAGTCTGACACCACTTTAAATCGTATTCTATCTGTTGCGACTCAGTTTGATAATGCTGAACTAGACTTTAGCTTCGATGTGTCAGGGACAACGGTTGTGCGCCGCTTAATCAACATTCATCAGCGTATAGGCGCTGACAGAAACATCACGCTGTATGTGGATAAAGACATCAATAAAATTGTGACATCGGGCAGCATTTATGATCTTTATACGGCCGTTACACCGACAGGGGGTACGCCTGAAAGCAAAAATGGCGAGACCGCGGATCAGCAGCCAATCACGCTTCAAGGTTATCAGTGGACAGATCCCGATGGTCGTTACGTGTTAACGAAAGAAGGTGTTTTGCTTGACCCGGTAGCCAACCAAACATGGAGCAGACTTTTAGCTAAGGGTGGTGCACCGAGTGTCAATGCAGCGTATATCAATCGTGTTGTCACTTATACGGCTACTTCGCAAGCGACTTTGCTTCAATCTGCACTCTCTGATCTTAAGGCTCACAATCATGAAGCAGTCAATTATGAGACTGACATTGCTGTGCTGCCACAAAATATCAACATTGGTGACACAATTCATTTAGCTGACGAGAATGAGCAATTGTACTTGTCGGCTCGCTTGCTAGAACTCAAATCAAGCTATTCGATGGATACACACACAGCAACATTAGGAGACTACCTTATTGAACATGATCAGGTAGCAGCTCAATATCGGCAGCTTGCTGAACAAATTAAGAACATTCCCAAAACAATCCAATACTATCCGTGGCTTCGCTACGCTGATGATGACAAGGGCACTAACATGTCAGCTTTGCCAGCTGGCAAAAAGTATATGGCGGTTGTATACAGCAACAAGTCATCCGTTCCAAGTGACGATCCGGCTGATTACGCTGGCAAGTGGGCATTGATTCAAGGACCAAAAGGTGATACTGGTGTTGGTGTCCCGGGCCCTAAGGGCGCTGATGGCCGTACTGCCTACGCTCACTTTGCTTATGCAAACAGCCAAGACGGCAAGGCCGACTTTTCAACAACTGATTCTAATCGCAAGTATATTGGTTTCTACAGCGACTTCACATCTGGCGACAGCACGAATCCAAGTGACTATAACTGGTCACTGATTAAGGGTGCGGACGGTGCTGATGGTAAAGATGGGGTGCCAGGGAAACCGGGTGCCGATGGCAGAACACCGTACTTCCATATTGCCTATGCTGATAGCAGTGACGGTAGAGTGAACTTTTCGCTCGATACCCCCGGCTCTCGCAAGTACATCGGTAGTTATACAGACTTCACACAAGCTGATAGCGCCAATCCAGCTACTTATAGTTGGCAACTAGTGCAAGGGCCAAAGGGCAGCGACGGTAAGGGAAGCTATACTCACGTTGCATACGCTAACAGTATTGATGGCAAAACAGACTTCTCGACTACTAATGGTAATGGGAAAATGTATCTTGGCATATATGTTGACCAGACCCAAGCGGAGAGTACCGACCCAGCTAAATACTCATGGGCATTGTTCAAAGGTACTGATGGTCGTGACGGCAAAGATGGCAGTGATAATGTGCCAGTCATTACTGTTGGTGCAGCGTATCCATCAGGTCCCAAAAAGGGGGATATGCATTGGCTGACTGATAGCAGCGGTGTTGTAACGGGATATTATACCTATGATGGGACTAAATGGAACCCTTATAAAATCGACGCTAAGATTCTTTCGGCAGAAACATTTAACGGCATGACCTTCAACGGGGTTACATTTACCGGGTCTAAGTTCATTTCTTCATTTAAAGGTGTCAAACCCGATGGCGTTGCCGACTATACCGTCCACGGGACAACCACAATGGCCGATGGCAAGATCGTCACAGATACGTATTCGGATACTGACAACAGTCAGGTGACGCATACCGAACTCAGCCAATTTGGCTTGCTAAGTCAAATTTATAACAAAGGCACGCTGATGGATAGTGCGCAACTATCGTTAGGTATGTTAACGCTAAGCGGCAACTATCAAACTGCCAGTAACAAGCCGTTGGAGTGGATCACCAGCAGCTTAGATGCTTTAAGAGTCTTGCAATTAACAAATAATAACTTGCTTGTTTGGCATGGCGCTTTCTATCCAGCTCAGGCTGATACTGCGACAATATCGACGCCACTTTCAAAAACATTATCCGGATGGCTAATTGCTTGGAGCTATTATCAAAACGGAGCACCGACGTATAACAACTATGCGTTCACTCTGATTCCCAAGGCCGCATTGATCTACAACACGACTGGTGCTAACTATTTACGAGTTACCTTCACGATGAAAAACGTTGGGACCATCTTCAAAGTTATATGGTATGACGATACACACATTATTGGGGCTGATGAAAACAAGGGCGGATCGCTTGCACAAGCGGTTATGACTGAGGTATACGCAGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
564636e999e5855338baba556fbda3204f520ade3a2afb47f5a6221a35bd384e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7879
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence of the temperate bacteriophage LJ isolated from Lactobacillus casei Yu,M., Qi,R., Jiang,X., Tang,T., Qiao,X., Jiang,Y., Wang,L., Tang,L., Xu,Y. and Li,Y. 2008-09 — GenBank