Protein

View in Explore
Genbank accession
YP_009798060.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,70
Protein sequence
MADISIPEGDNPVRYQASLGGNQKYRNMGNVSGQAYLVRGQVTNVYYQKGTLDFNTYGSSVTSGVTDGSGSAPIPVDFWGKNTDGKVFGCYRPVQKGSQILVAYIGGDTSRPIVIGVYPDNEASYELISPVHYNTGDDSTDDVQNDALGERKIYPNQQMMYESGKGDILRSMGGKSFLYISENGSGYLDDINYAYDEIRDFYDADANEIEPTMTKAQSWLLVHEDNDSDEAADGHRTRFYVNRSGELMVTFANKDDPNEIVILEASKDSGFKLTKRFDSSNLKEQSEDYVQFGIGNGNNVSIQSVDSGDATSFYLDNGNIKLDTPKEGSITFDGISVNAILGRVSDAENAANNASDKADNAAIAGERAESAASDAASQALAASQAGEDAKSAAVEAKAAGEDAKNQAKDTQDRIIYYASISNEEDVAVPGKYIIVNTDTYIANGTIKTAHIADAAITTAKIALAAIGTAQIEDAAITKAKIGNLAVGTAQIEDAAITDAKVGNLSANHLNAGTIDFSVINGTNINASNITVGKLVANQLEIKSLDELSNNLGTIDNGTLGNLNNWGSVKLYADVYAHTFSNLTGTFTADANGGVVASNLTIRGVTNLVYNASLLGGNGSNIPGWGISNNGYYSNYTLHDGVPSIGFNASTGAGVWNIFAQSKLYPLNGLTGQPYSASVWFIEYGSDPNMLYQFTLAAFDSNKNRINGFSGVTWSGISTAQPWRYITINNFITPSNAAYIGIQYWSYNGTGHALFSSPMLTQTAQSTGYQPDTGNIVNAGIINGSTINAGSVINNSNNTSNWYPLTLNPNGDITSTHIDDNAGLQTYISGGAVETRYNEFTANGYGKYSSHVVGMGADGSIMVTDGGTDNKDTAFNAPLTSTYGAVYINASGISLYGANQNFLFNGTSSTGTNGIRMDSYGNVHGEGTSTWWRVYDSSGSQVANFGTAPGNNTTFPKPIFTDEIGALSSSNSGQLLIHDLKGTAQMGFSNDGTPRVFSSSIWNRTYPSGSTVMVTEYGTLGRINSSSKYKLDIVKETDISRADKLLTLDMSSWVDKSSAERIADAKTNGKTLGEPEINVFRNYGLIAEDLIKAGLEDFVITGKNGQAESIQYDRLWITLIPKIRQLSNESIQNKMTISKLENEIENLKQGR
Physico‐chemical
properties
protein length:1150 AA
molecular weight: 122972,57760 Da
isoelectric point:4,64979
aromaticity:0,09043
hydropathy:-0,35643

Domains

Domains [InterPro]
DC_0015
STR
1–1142
DC_0015
Coil
Unmapped
393–413
Coil IPR030392
Coil
Unmapped
1122–1142
Coil
YP_009798060.1
1 1150
Architecture
STR
STR 1-1143 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009798060.1
1 1150
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,8781
Central domain 147 990 845 0,5745
C-terminal 991 1150 159 0,9239
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-990
C-terminal
991-1150

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Bacchae
[NCBI] 		2079429 Uroviricota > Caudoviricetes > Herelleviridae > Harbinvirus bacchae >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009798060.1 [NCBI]
Genbank nucleotide accession
NC_047924.1 [NCBI]
CDS location
range 23932 -> 27384
strand +
CDS
ATGGCTGATATTAGTATTCCAGAAGGTGACAACCCTGTACGCTATCAAGCATCATTAGGTGGTAACCAAAAATATCGTAATATGGGAAATGTTTCTGGTCAAGCATATCTTGTTAGAGGACAAGTAACTAATGTTTATTATCAAAAAGGTACTCTAGACTTTAATACGTATGGGTCTAGTGTCACTAGTGGTGTTACTGATGGTTCTGGTAGTGCACCTATTCCAGTTGATTTCTGGGGTAAAAATACAGATGGAAAAGTATTTGGATGTTATCGCCCTGTGCAGAAGGGTTCTCAAATACTGGTAGCCTATATTGGCGGTGATACTTCTCGGCCAATTGTAATCGGTGTTTACCCTGATAATGAAGCTTCATACGAACTAATTTCACCAGTGCATTATAATACAGGTGACGATAGCACAGACGATGTTCAAAATGATGCTTTGGGAGAGAGGAAAATATACCCTAACCAGCAAATGATGTATGAGTCTGGTAAGGGAGACATCCTAAGAAGTATGGGTGGCAAGTCTTTCTTATATATATCTGAAAACGGTAGCGGATACCTAGATGATATAAACTATGCTTATGATGAAATTAGAGATTTCTATGATGCTGATGCAAATGAAATTGAGCCAACAATGACTAAGGCTCAGTCTTGGCTGTTAGTTCATGAAGACAATGATAGTGATGAAGCAGCAGATGGTCACAGAACAAGATTCTATGTTAATCGTTCTGGGGAGCTAATGGTAACATTTGCAAATAAAGATGACCCCAATGAAATTGTTATTTTAGAGGCTAGTAAAGATTCTGGATTTAAGCTAACAAAGAGGTTCGATAGTAGTAATCTTAAAGAACAATCAGAAGATTATGTTCAGTTTGGCATAGGAAATGGAAATAATGTTAGTATCCAGAGTGTTGACAGCGGGGATGCTACTTCTTTTTATTTAGATAACGGAAATATTAAACTTGACACTCCAAAAGAAGGTTCAATAACCTTTGATGGCATATCAGTAAATGCCATATTAGGTAGAGTATCAGATGCAGAAAACGCTGCTAATAATGCTAGTGATAAGGCAGATAACGCTGCTATTGCTGGAGAACGTGCTGAGTCTGCTGCTAGTGATGCAGCAAGTCAGGCGCTAGCAGCAAGTCAGGCTGGTGAAGATGCTAAGAGTGCTGCTGTTGAAGCTAAAGCAGCTGGTGAAGACGCTAAGAATCAAGCTAAAGATACTCAAGATAGAATAATCTATTATGCTTCGATTTCTAACGAAGAAGATGTAGCTGTACCCGGTAAATATATTATAGTTAACACAGATACCTATATTGCAAACGGTACAATCAAAACTGCACATATTGCAGATGCCGCTATTACAACTGCTAAGATTGCGTTAGCAGCTATTGGTACTGCACAAATTGAAGATGCCGCTATTACTAAGGCAAAGATAGGTAATCTTGCAGTTGGTACTGCACAAATTGAAGATGCCGCTATCACTGATGCAAAAGTTGGTAACTTAAGTGCTAACCATTTGAATGCAGGAACCATAGATTTTAGTGTTATCAACGGTACTAATATCAATGCTTCTAACATTACTGTTGGAAAATTAGTTGCTAACCAGCTTGAGATAAAAAGCCTTGATGAACTTTCTAATAATCTAGGTACTATTGATAATGGTACTTTAGGTAACCTTAATAATTGGGGCTCAGTTAAGCTATATGCAGATGTATATGCCCATACTTTTAGCAACCTAACTGGGACATTTACAGCTGACGCTAACGGTGGAGTTGTAGCAAGCAACCTAACAATCAGGGGAGTCACAAACTTAGTATATAATGCTTCATTATTAGGTGGTAATGGCTCTAACATCCCAGGTTGGGGTATTAGTAATAACGGATACTACTCAAATTATACTTTGCATGATGGTGTACCCTCAATTGGTTTTAATGCTTCTACTGGTGCTGGAGTTTGGAATATTTTTGCACAGTCAAAGTTGTATCCCTTGAATGGACTAACCGGTCAGCCCTATAGTGCATCTGTGTGGTTTATTGAATACGGTAGTGACCCAAATATGTTATACCAGTTTACTCTAGCAGCATTCGATTCTAACAAAAACCGTATTAATGGTTTCTCTGGGGTAACATGGAGTGGTATCTCAACCGCTCAGCCTTGGAGATATATTACTATAAATAATTTTATTACTCCAAGCAATGCTGCCTATATTGGAATACAGTATTGGTCATATAACGGCACTGGTCATGCGCTATTTAGCTCACCTATGCTAACTCAAACTGCTCAATCAACGGGTTACCAGCCAGATACAGGTAATATTGTTAACGCCGGTATTATTAATGGCTCTACAATTAATGCTGGTAGCGTGATTAACAATAGCAATAACACCTCGAACTGGTATCCTTTAACGCTTAACCCTAATGGTGACATAACTTCTACTCACATAGATGATAACGCCGGACTACAGACTTATATCTCTGGTGGTGCTGTTGAAACAAGATATAACGAGTTTACAGCCAATGGTTATGGTAAATACTCATCACACGTTGTAGGCATGGGAGCTGACGGTAGCATAATGGTTACTGACGGTGGGACGGATAACAAAGACACTGCGTTTAATGCCCCACTTACTAGTACCTACGGAGCAGTTTATATCAATGCATCAGGGATATCTTTATACGGTGCTAACCAGAACTTTCTGTTTAACGGAACATCTAGTACCGGTACTAATGGAATAAGGATGGATAGCTACGGTAACGTCCATGGAGAAGGAACTTCTACTTGGTGGCGTGTATATGATTCTTCTGGTAGTCAAGTAGCAAACTTCGGAACTGCTCCTGGTAATAACACTACGTTTCCTAAACCAATATTTACTGATGAGATTGGCGCCCTAAGTTCTTCTAATAGTGGACAACTTTTAATACATGACTTAAAAGGTACTGCTCAGATGGGGTTTTCTAATGATGGAACTCCTCGGGTATTTTCTTCCTCTATTTGGAACAGAACCTATCCTAGTGGTTCTACTGTAATGGTTACTGAATATGGGACTTTAGGTAGAATAAATTCTTCAAGTAAATACAAGCTTGATATCGTTAAGGAAACAGACATTAGCAGGGCTGACAAATTATTAACGCTCGACATGTCTAGCTGGGTAGACAAATCATCAGCAGAGAGAATAGCTGATGCTAAAACTAATGGAAAAACTCTTGGGGAGCCGGAAATAAATGTATTTAGAAACTATGGTCTAATAGCAGAAGACCTTATCAAGGCTGGACTAGAAGATTTTGTTATTACTGGAAAAAATGGTCAAGCCGAGAGTATACAGTATGATAGGCTATGGATTACTCTTATTCCGAAGATAAGACAACTTTCAAATGAAAGCATTCAGAATAAGATGACAATATCAAAACTAGAAAATGAAATTGAAAACCTAAAACAAGGAAGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
44ee53d4233737cb900d1af27672a230ea0a6ce92e0ad26ebd599b6af2dc9da2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5358
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactobacillus phages that infect wine-derived L. plantarum strains Kyrkou,I. and Hestbjerg Hansen,L. 2018-12-03 — GenBank