Protein

View in Explore
Genbank accession
WPK40672.1 [GenBank]
Protein name
baseplate hub subunit and tail lysozyme
RBP type
TSP
Evidence RBPdetect2
Probability 0,51
Protein sequence
MSTYSRTVGVNPSASKTPTGRAQKYYGMYIGFVKDNVDSNRMGRLRVWVPEFGTDPSDESGWLLVGYCSPFAGATNPMTIGGSQDVSAFHETQTSYGMWAVPPDLENQVAVMFANGDPAKGFWFGCIWQQQMNHMIPAVAGSVNNYETAGKSLPVGEYNKNTLEKVNAQTINKPVASLAQGLKTQGLINDNIRGVSSSSARREAPSQVFGILTPGPVIDGANVRRHGGHQFVMDDAPTSEHITLRTRSGAQIRLDETNGIIYIINKLGTAWIELDNSGNVDVFGAKSGSLRFMEDFNIRADRDINIEAGRNINIKASKDYTTVSTGGIAPELTGQGGDIFIQANNNLNIQSQKDTLLNQLGGSLHNTAGVDISLKAGSNYNLQAAGQIATATNGTYGLSAGGDIIELGANIHMNGPQPPAPDSPTEASTPTTNGKTNILPEFSDANRYNRMSQPGVTTIVSRFNTFEPCPEHKNKGA
Physico‐chemical
properties
protein length:477 AA
molecular weight: 51110,34730 Da
isoelectric point:5,94049
aromaticity:0,07338
hydropathy:-0,41006

Domains

Domains [InterPro]
SSF69255
ATT
25–126
SSF69255 DC_1827 SSF69349 DC_1558
SSF69255
ATT
25–130
SSF69255
WPK40672.1
1 477
Architecture
ATT
STR
RBD
ATT 25-130 | STR 131-415 | RBD 416-477
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK40672.1
1 477
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,1607
Central domain 257 455 200 0,3725
C-terminal 456 477 21 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-455
C-terminal
456-477

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Paride
[NCBI] 		3092178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK40672.1 [NCBI]
Genbank nucleotide accession
OR805295 [NCBI]
CDS location
range 224701 -> 226134
strand -
CDS
ATGAGTACATATTCTAGAACAGTAGGTGTAAATCCGTCTGCTAGCAAAACACCGACAGGCAGAGCACAAAAATATTACGGAATGTATATTGGGTTTGTCAAAGATAATGTCGATAGCAACAGAATGGGAAGACTTAGGGTTTGGGTACCGGAATTTGGTACTGATCCGAGCGATGAATCTGGTTGGTTGTTAGTTGGATACTGTTCGCCATTTGCTGGCGCAACTAATCCTATGACAATCGGCGGCTCACAAGATGTATCTGCATTCCACGAAACACAAACATCTTACGGTATGTGGGCAGTTCCGCCAGATCTTGAAAATCAGGTAGCTGTAATGTTTGCTAACGGCGACCCTGCAAAGGGATTTTGGTTTGGATGCATATGGCAACAACAGATGAATCATATGATTCCTGCAGTTGCTGGCAGTGTTAATAATTATGAGACAGCAGGAAAATCTTTACCTGTAGGTGAATATAATAAAAACACACTAGAAAAAGTAAATGCACAAACTATTAATAAACCTGTTGCTAGTCTTGCCCAAGGATTAAAAACGCAAGGGCTTATTAACGATAATATACGGGGTGTATCTTCATCATCTGCACGCAGGGAAGCACCTAGCCAGGTATTCGGTATTCTTACCCCAGGTCCAGTAATAGACGGTGCAAATGTAAGAAGGCATGGCGGCCATCAGTTCGTCATGGATGATGCACCCACATCCGAACATATCACATTAAGAACTAGATCTGGTGCTCAAATAAGATTAGATGAAACTAATGGAATAATTTATATAATTAATAAATTGGGCACTGCTTGGATAGAATTAGATAACTCAGGTAACGTAGATGTGTTTGGTGCAAAATCCGGATCTTTACGTTTTATGGAAGATTTCAATATACGAGCAGATAGAGATATTAATATAGAGGCAGGAAGAAATATAAACATTAAAGCATCTAAAGATTATACTACTGTTTCTACCGGAGGCATAGCACCGGAACTAACAGGTCAAGGCGGAGATATATTTATACAAGCTAATAATAATTTAAATATTCAATCGCAAAAAGATACATTACTAAATCAATTAGGAGGCAGTTTGCATAACACTGCTGGAGTTGATATATCTTTAAAAGCAGGTTCTAATTATAATTTACAAGCTGCAGGACAGATAGCAACTGCTACTAACGGAACATATGGATTAAGTGCAGGCGGGGATATTATCGAGTTAGGTGCTAATATACATATGAACGGTCCGCAGCCGCCGGCACCTGATTCTCCTACTGAAGCAAGTACACCTACTACTAATGGCAAAACTAATATATTGCCTGAGTTTAGTGATGCAAATAGATATAATAGAATGTCTCAGCCAGGAGTAACTACTATAGTATCTAGATTTAATACATTCGAACCGTGTCCTGAGCACAAAAATAAAGGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f30d3ba7aea2e7ea15a143dcb211e20f9abfe882f37682c7d2bfc59e84373a9a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5872
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank