Protein

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Genbank accession
AFM54342.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTDITANAVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKVVTVKGHSMAIYDAYGCQVDYIANVLKYDPDQLEYRLSQPDGYLLVGGLAEHYNLPAKFVVVDNEPYNGDLKAALSEAEAGTVFWLGKKTYNITGLYGTGRNTVENISIVGTGMPQLSDDKTRFIDGTGTVIQGAVKNQARGFKTYNLGIDVGAYVSQNVYTTETYEDALVHYGVGSNANIEIDNVKTLSSVNVASKPGTHSILLEQLSGVTLGYVECIGGFHGLTIKCQNLQGGIAHCYGQYGDAFIFKSDSGGACASNYMERIAVGLYDNAGWPDVTMGGIYDAHDDVTIDRIGIGELIVQNASWGFIPSDANTGFITNVSIGRYSAFNVYGNYYSLTIDNKCVGWTIGEHRISNASGGIRVHPDSAEINIGTGSAKGNTESGYALGGNSLSHGVLFANENGKAGVDYLGGIGFDASLVRGYVNGTVLVSGYPGVKDGNPVNGWADTGDFDMMLTGKTVQITGSLTRGTAAVAYNTIAACRPLKRVPVPAWGVSATSSMIPVECYIETNGQLNVAGFASIPAGGTVYFSGQYLTK
Physico‐chemical
properties
protein length:618 AA
molecular weight: 65590,69430 Da
isoelectric point:5,07188
aromaticity:0,09547
hydropathy:-0,05405

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093
IPR009093
ATT
1–100
IPR009093 DC_0478
G3DSA:2.170.14.10:FF:000001
Unmapped
2–110
G3DSA:2.170.14.10:FF:000001
IPR036730
ATT
2–111
IPR036730
IPR036730
ATT
7–109
IPR036730
AFM54342.1
1 618
Architecture
ATT
STR
ATT 1-113 | STR 114-618
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFM54342.1
1 618
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,9823
Central domain 147 505 360 0,9927
C-terminal 506 618 112 0,9921
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-505
C-terminal
506-618

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SemP_Emek
[NCBI] 		1168548 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFM54342.1 [NCBI]
Genbank nucleotide accession
JQ806763 [NCBI]
CDS location
range 18046 -> 19902
strand +
CDS
ATGACAGATATCACTGCCAACGCAGTTGTTTCTAACCCTCGCCCAATCTTTACTGAATCCCGTTCGTTTAAAGCTGTTGCGAATGGGAAAATTTACATTGGTCAGATTGATACAGATCCGGTTAATCCTGCCAATCAGATACCCGTATACATTGAAAATGAGGATGGCTCTCACGTCCAGATTACTCAGCCGCTAATTATCAACGCAGCCGGTAAAATCGTATACAACGGCCAACTGGTGAAAGTTGTCACCGTTAAGGGTCATAGCATGGCTATCTATGATGCCTATGGTTGTCAGGTTGACTATATTGCTAACGTATTGAAGTATGACCCAGATCAGCTTGAATACAGGCTGAGCCAACCAGACGGTTATCTTTTGGTTGGTGGACTGGCCGAGCATTATAACCTTCCGGCTAAATTTGTCGTCGTCGACAACGAGCCATATAACGGTGATTTGAAAGCAGCACTTTCTGAGGCTGAAGCCGGTACTGTGTTTTGGCTTGGTAAAAAAACATACAACATTACCGGCCTGTACGGAACTGGCAGGAACACAGTTGAAAATATCTCTATTGTTGGCACTGGGATGCCTCAGTTATCTGATGATAAAACCAGATTTATCGATGGAACTGGGACAGTTATTCAAGGGGCGGTAAAGAATCAAGCGAGAGGGTTTAAAACCTACAACCTTGGGATCGATGTTGGTGCTTATGTGTCTCAGAATGTGTATACAACGGAAACTTACGAGGACGCTCTTGTGCACTATGGTGTTGGTTCCAACGCCAATATAGAAATTGACAATGTCAAGACGCTGAGTTCAGTTAACGTTGCCAGTAAGCCAGGAACGCACAGCATTCTTCTTGAGCAATTATCCGGTGTAACCTTGGGTTACGTTGAGTGCATTGGTGGTTTTCATGGTCTAACGATTAAGTGTCAAAATTTGCAGGGCGGCATTGCTCATTGCTACGGCCAATATGGTGATGCATTTATCTTCAAATCAGATTCTGGTGGCGCATGCGCCAGTAACTATATGGAAAGAATTGCAGTTGGTCTTTATGACAACGCTGGCTGGCCTGACGTCACCATGGGTGGTATTTACGACGCCCACGATGATGTAACAATCGACAGAATTGGCATTGGTGAGTTAATTGTGCAGAACGCGTCATGGGGATTTATACCATCTGATGCCAATACCGGTTTCATAACAAACGTCAGCATTGGTAGATACTCTGCATTCAATGTCTATGGGAACTATTATTCATTAACCATTGATAATAAATGTGTTGGTTGGACTATTGGTGAGCACAGAATTAGCAATGCATCTGGCGGCATTCGTGTTCACCCGGACTCTGCAGAAATCAATATTGGAACCGGATCCGCAAAGGGGAATACTGAGAGTGGCTATGCGTTGGGAGGCAACAGTTTAAGTCACGGCGTGCTCTTTGCTAATGAGAATGGGAAGGCTGGAGTTGATTACCTCGGTGGTATTGGTTTTGATGCCTCTCTTGTCCGTGGTTATGTTAACGGAACGGTTCTTGTTTCAGGATATCCAGGCGTAAAAGACGGTAATCCTGTAAATGGGTGGGCTGATACTGGTGATTTTGACATGATGCTAACCGGCAAGACTGTGCAGATCACAGGTTCACTGACTCGCGGAACAGCTGCGGTTGCGTATAACACTATCGCTGCGTGCAGGCCTTTGAAGCGAGTGCCTGTCCCGGCATGGGGTGTTAGCGCGACAAGCTCTATGATCCCAGTTGAGTGTTATATTGAAACTAACGGTCAATTAAACGTAGCTGGGTTCGCCTCGATACCAGCTGGCGGAACTGTATATTTCTCTGGACAATATTTAACAAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2893d4e6219b0daa7c0090a9f96753410714710616a6697646c0866aa9f9d033
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8076
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of two new Salmonella bacteriophages: vB_SosS_Oslo and vB_SemP_Emek Ho,N., Lingohr,E.J., Villegas,A., Cole,L. and Kropinski,A.M. 2012 — GenBank