Protein

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Genbank accession
QKN88560.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MPSKITQALKDYLNNNDKVQLAHLVRIELPGDLASFAYYTDYSREIQYDGQEFVPGKVKNISDVKQSNRLSAHNVTIKITGASSEEVDRAVRSQQYLNKKISIWRVVLDNTTGEIIPYYDDGSTLLFFEGTITEVSIDENRSATSRGESTISWKCANEFYDLERVNGRLTDDEAHRGLIVDQDGDEVPSNAAKRFEYQTDLGFFHANKSVNILAKYQGLEQAYKLKKKSSGLFGIKKSYDLVEYWETVEKEVDMRFNLAAKNIPTIYGVQKTQGIPVFADTLLDDPSTVYVVYAFCEGEIDGFLDIWMEDKPLVCNDTNDADERACFGVKRGNGDTISVATPTQDPTAPSVHGQEYIVQDGLGQVSFWTFHGKRDQTACSKLVDIAADGNFYLQNNGPTPMGPEYWDNRYRLLDTAYVVAEFKITDQRTEIPTIYAEIQGRKVAVYDENGLVRDDRTSTNPAWQMLDYLNSPIFGASVGMDRIDLNTFVEVANLLDTVDNTYELSWVPFWRYIGWEDNTTEANKAILQTNPLLNGETSLFKNMKSMLEQAESSLNIIEGKYALTVESLKDPVADLTEADLVGGRLQVSDITSKEKYNTVQADIRDPGIGWESNDIIFFNADFKAEDNQLEKKANISFPHVTNYYCARALAERVLKKSRYNREVSITVPYKYVDLPINSPVTLTYERFGWDKKQFLIRETVWQSTGKVKLKLREYEDGVFINSPQSDIGDSQIPEIGTKVLPPRDLNYRPSIPGDPEGVNGYLRWLPSFSPDVTYYAINYTGVASTITVNASSTDEPNTYIELPIDTITEDRIYTFEVRAVAGNKGLSSSPAILSLQLGPDGTKNLTMVTGFDLVNNITGDETVWKGAEVSLQWNPIFEEDFMDNIYYNLEFWDGDFDTGDLIRALEIRNAYAYIYDLPANKSDYLAAKGTKGMFRQLGVRIRAESDDGAKSVGWTKI
Physico‐chemical
properties
protein length:957 AA
molecular weight: 107968,35310 Da
isoelectric point:4,68429
aromaticity:0,10867
hydropathy:-0,44211

Domains

Domains [InterPro]
PF09931
ATT
7–141
PF09931 DC_0187
IPR032876
ATT
569–674
IPR032876
QKN88560.1
1 957
Architecture
ATT
STR
ATT
STR
ATT 7-141 | STR 233-568 | ATT 569-674 | STR 675-952 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QKN88560.1
1 957
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9521
Central domain 309 544 237 0,2045
C-terminal 545 957 412 0,0147
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-544
C-terminal
545-957

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValS_X1
[NCBI] 		2736341 Uroviricota > Caudoviricetes > Demerecviridae > Pogseptimavirus VspSw1 >
Host Vibrio alginolyticus NBRC 15630 = ATCC 17749
[NCBI] 		1219076 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QKN88560.1 [NCBI]
Genbank nucleotide accession
MT442039.1 [NCBI]
CDS location
range 108912 -> 111785
strand +
CDS
ATGCCGAGTAAGATTACTCAGGCACTAAAAGACTACTTAAACAATAATGATAAGGTACAGCTAGCACATCTAGTTAGAATAGAACTACCAGGAGACTTAGCTAGCTTTGCCTACTACACTGATTACTCTAGAGAAATCCAGTACGACGGACAAGAGTTCGTCCCTGGTAAGGTCAAGAACATCAGTGATGTTAAGCAGTCTAATAGGCTTAGTGCCCATAACGTAACAATTAAAATAACCGGTGCATCCTCTGAGGAGGTAGACCGTGCAGTACGCTCACAGCAGTATCTAAATAAGAAGATTTCTATATGGAGAGTGGTACTAGACAACACAACCGGTGAGATAATTCCTTACTACGATGATGGAAGTACCCTACTGTTCTTTGAAGGTACCATAACTGAAGTGTCTATCGATGAGAACCGTTCAGCCACTTCTAGAGGGGAATCTACCATATCATGGAAGTGTGCTAATGAGTTCTATGACTTAGAACGTGTAAATGGTAGATTAACAGATGATGAAGCTCACCGAGGTCTTATCGTAGACCAAGACGGAGACGAGGTTCCTTCTAACGCAGCTAAGAGGTTTGAGTATCAGACTGATTTAGGCTTCTTCCACGCTAACAAGTCAGTAAACATACTAGCTAAGTACCAAGGCCTAGAGCAGGCTTACAAGCTTAAGAAAAAGTCTTCAGGTCTTTTCGGTATTAAGAAGTCTTACGACCTTGTTGAATACTGGGAAACTGTAGAGAAAGAGGTTGACATGAGATTCAACCTTGCAGCAAAGAACATCCCTACTATTTACGGGGTTCAAAAGACCCAAGGTATTCCGGTATTCGCTGACACACTACTAGACGACCCTTCTACTGTATACGTAGTGTACGCATTTTGTGAGGGAGAGATAGACGGATTCCTAGATATATGGATGGAAGATAAGCCTTTAGTGTGTAATGACACTAACGATGCTGATGAGCGAGCTTGCTTTGGTGTAAAAAGAGGTAATGGAGACACTATTTCTGTTGCTACACCTACCCAAGACCCTACAGCGCCTTCTGTACATGGTCAAGAATACATCGTTCAGGATGGCTTAGGGCAAGTAAGCTTCTGGACATTCCATGGTAAAAGAGACCAGACAGCATGTTCTAAGTTAGTAGACATAGCTGCCGACGGAAATTTCTACCTACAGAATAACGGACCAACCCCTATGGGGCCAGAGTACTGGGACAACAGATACCGTTTGCTAGACACAGCCTACGTAGTAGCTGAGTTTAAGATAACTGACCAAAGGACAGAGATACCTACCATCTACGCAGAGATACAGGGAAGAAAGGTAGCTGTTTACGACGAAAATGGCTTAGTAAGAGACGACAGAACAAGCACCAACCCAGCATGGCAGATGCTAGACTACTTAAATAGTCCTATCTTCGGGGCTTCGGTGGGTATGGATAGAATAGACTTAAATACTTTCGTAGAGGTAGCTAACCTACTAGATACTGTAGACAATACTTACGAGTTATCGTGGGTACCTTTCTGGAGATACATCGGGTGGGAAGATAACACTACTGAAGCGAATAAGGCTATTCTACAGACCAACCCATTGCTTAACGGGGAGACTTCACTCTTCAAGAACATGAAGAGTATGTTAGAGCAAGCCGAATCTTCTCTAAACATTATAGAAGGTAAGTATGCACTAACAGTAGAGTCATTAAAAGACCCTGTGGCCGACTTAACTGAGGCGGACTTGGTGGGAGGACGACTTCAGGTATCAGATATAACGTCCAAGGAGAAGTACAACACAGTACAGGCAGATATTAGAGACCCTGGAATAGGTTGGGAGTCCAACGATATCATATTCTTTAATGCGGATTTTAAGGCAGAAGATAATCAGCTAGAGAAAAAGGCTAATATATCGTTCCCGCACGTAACCAACTACTACTGCGCTAGGGCTTTAGCGGAGCGTGTTCTTAAGAAGTCTAGGTATAACCGAGAAGTGTCTATTACAGTTCCTTACAAGTACGTAGACCTGCCAATAAACTCTCCAGTAACCTTGACGTATGAACGTTTTGGTTGGGACAAGAAGCAATTCCTAATCAGAGAAACTGTGTGGCAGTCTACTGGTAAGGTTAAACTAAAGCTCAGAGAGTACGAGGACGGTGTGTTTATTAACTCGCCTCAGTCGGATATAGGAGACTCTCAGATACCTGAGATAGGTACCAAAGTACTTCCGCCTAGAGACCTAAACTATAGACCTTCCATTCCTGGAGACCCTGAAGGAGTGAATGGTTACCTAAGATGGCTTCCTAGCTTCTCTCCTGATGTAACGTACTACGCAATCAACTATACTGGGGTAGCTTCGACTATCACAGTCAACGCCTCCTCTACAGACGAGCCTAATACGTACATAGAGCTTCCTATAGACACTATTACTGAGGATAGGATTTACACTTTCGAAGTCCGAGCGGTGGCAGGTAATAAAGGATTATCTTCCTCTCCAGCTATACTCTCCTTGCAACTAGGCCCTGACGGTACCAAGAACCTTACTATGGTGACGGGATTTGACCTAGTGAACAACATCACAGGAGATGAGACAGTATGGAAAGGTGCGGAGGTTAGCCTACAATGGAATCCGATATTCGAAGAAGACTTCATGGATAATATATATTATAATTTGGAATTTTGGGACGGCGATTTCGACACGGGTGACTTAATTCGTGCGTTAGAGATACGTAATGCTTATGCTTACATATACGACCTCCCTGCCAATAAATCAGACTACTTAGCTGCTAAAGGTACTAAAGGTATGTTCAGGCAGTTAGGGGTTAGAATACGAGCAGAATCAGATGACGGAGCTAAATCCGTGGGATGGACAAAAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ecc4b8c0e686526ad4d9bb2ba8c1a9da864a8f7113bf9603ddbf8197299dde5c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2882
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and Genomic Analysis of Vibrio Phage vB_ValS_X1 Sheds Novel Insights into Evolution and Interaction of Vibrio-phage Zhong,W., Yang,Y., Cai,L., Xu,J. and Zhang,R. 2024-07-29 — GenBank