Protein

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Genbank accession
UPW35229.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQINGWSSETQGLQKRPPSTFVKRLGVTGMWGAKPLVHLVNRDAVEQYYMVFTGTGVAVMDLKGNQYTVRGYDGYANCADPRADLRLITVADYTFVVNRRTTVGMSGELTHAGYRDLNTRAVVACRGGQYGRTVTVEVLIDVTWVRLAELKLPSGVGEPGQIEPMVAQVDAQNMIRAMVDQVNVNGAPWKITAGEYAGCMLLHRDDGGIFNGIRTKDGYADQLINGFIYQVQSFNKLPAQAPEGYLVEITGEATRSGDNYWVRYDGAQRVWKETVKPGIIAGLNPVTMPRGLVRAADGQFDWKVLEWAKRNAGDDETNPMPSFVDGTINDVFFFRNRLGFLSGENVIMSRASRYFNFFPPSVASLSDDDPLDIAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVKLNLTTEFDVQDTARPFGIGRGVYFSAPRAAYTSLKRYYAVQDVSDVNNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGASDRIYIYKFLYMAEEIAQQAWSHWEFGKANILACASIGSYMYLLLDRPEGVVLERLEFTAYTKDFPQEPYRTYMDSKVSVVCSSFDEDTFRSAMSLQLIYGGIPSPDSIFWSIDTQGVATLHEPPAGGWAADSNIYLQGDHRGKTFIIGRQYTFIYEFSKFLIKQTADDGTTATEDIGRLQLRRAWLNYERSGAFEISVHTGDPEKAYVYTMAGGRLGSEVILGELNLGTGQYKFPVTGNAMRQIVTIASDTPNPLNVIGCGYEGNYVRRSSGI
Physico‐chemical
properties
protein length:802 AA
molecular weight: 88979,35650 Da
isoelectric point:5,58587
aromaticity:0,11097
hydropathy:-0,22905

Domains

Domains [InterPro]
IPR058003
TTP
1–802
IPR058003
UPW35229.1
1 802
Architecture
TTP
TTP 1-802
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW35229.1
1 802
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9948
Central domain 145 355 212 0,0925
C-terminal 356 802 446 0,1549
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-355
C-terminal
356-802

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PCS5
[NCBI] 		2936830 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida NBRC 14164
[NCBI] 		1211579 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas putida

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW35229.1 [NCBI]
Genbank nucleotide accession
ON109291.1 [NCBI]
CDS location
range 24320 -> 26728
strand +
CDS
ATGGGTCTGGTAAGCCAGTCCGTAAAGAACCTGAAGGGTGGCATCAGCCAACAGCCGGACATCCTCCGGTTCCCCAATCAGGGTGCGCAACAAATCAACGGCTGGTCAAGCGAGACCCAAGGTCTCCAAAAGCGACCTCCGAGTACCTTCGTTAAGAGACTGGGAGTGACCGGTATGTGGGGCGCTAAGCCTCTGGTCCACTTGGTGAACCGAGACGCCGTTGAGCAATACTACATGGTCTTCACAGGAACCGGCGTGGCCGTGATGGACCTTAAAGGGAACCAGTACACGGTGCGTGGCTATGACGGCTATGCAAACTGTGCGGACCCGAGAGCCGACCTTCGCCTCATTACCGTGGCCGACTACACCTTCGTGGTGAACAGGCGGACCACTGTGGGGATGTCCGGTGAGCTGACCCATGCGGGCTATCGGGACCTGAACACTCGGGCTGTGGTTGCCTGCCGTGGCGGTCAGTACGGGCGAACCGTGACCGTAGAGGTCCTGATCGACGTTACGTGGGTGAGGCTCGCTGAGCTGAAGCTGCCATCCGGTGTAGGTGAGCCGGGCCAGATCGAGCCCATGGTGGCTCAGGTGGACGCTCAGAACATGATCCGTGCTATGGTGGATCAGGTCAACGTCAATGGTGCCCCATGGAAAATCACTGCTGGTGAGTACGCAGGCTGTATGCTGCTTCACCGGGATGACGGTGGAATCTTCAACGGGATTCGCACCAAGGATGGCTACGCGGACCAGCTCATCAACGGCTTCATCTATCAGGTCCAGTCGTTCAATAAGCTGCCCGCTCAGGCCCCTGAAGGTTACCTCGTGGAGATCACCGGGGAAGCCACACGCTCTGGGGACAACTACTGGGTCCGTTACGATGGAGCCCAGAGGGTCTGGAAGGAGACCGTTAAGCCGGGGATCATTGCGGGCCTGAACCCAGTGACCATGCCCCGAGGTCTCGTAAGGGCTGCCGATGGGCAGTTCGACTGGAAGGTCCTTGAGTGGGCCAAGAGGAACGCAGGGGATGACGAGACGAACCCTATGCCCTCCTTCGTGGATGGTACGATCAATGACGTGTTCTTCTTCAGGAACCGACTCGGCTTCCTCAGTGGCGAGAACGTCATCATGTCGAGGGCTTCCCGTTACTTCAACTTCTTCCCACCGTCCGTTGCGAGCCTTTCGGATGATGACCCTCTGGACATCGCCGTGAGCCACAACCGGATCTCGATCCTGAAGTATGCCGTACCGTTCTCCGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGCTGTCCTCGCAGGGCATCCTGTCCCCAAAGACGGTGAAGCTGAACCTGACCACTGAGTTCGACGTACAGGACACGGCCCGGCCTTTCGGTATCGGTCGCGGGGTGTACTTCAGCGCCCCACGGGCAGCCTATACGAGCCTCAAGCGGTACTACGCTGTGCAGGACGTATCGGACGTGAATAACGCCGAGGACGTATCCGCCCACGTTCCAAGCTACATCGAGAACCGGGTGTTTAACATCCACGGATCGGGGACCGAGAACTACGTCACCCTCCTGTCGGACGGGGCCAGTGACCGGATCTACATCTACAAGTTCCTGTACATGGCCGAAGAGATCGCGCAGCAGGCGTGGAGCCATTGGGAGTTCGGCAAGGCCAACATCCTCGCCTGTGCCTCAATCGGGTCCTACATGTACCTCCTACTGGACCGCCCTGAAGGGGTCGTACTGGAGCGTCTGGAGTTCACGGCGTACACCAAGGACTTCCCACAGGAGCCTTACCGGACCTACATGGACTCGAAGGTATCCGTGGTGTGTAGCTCGTTCGATGAGGACACCTTCAGGTCCGCGATGAGCCTTCAGTTGATCTACGGTGGCATCCCCAGCCCTGACTCGATCTTCTGGTCAATCGACACGCAAGGTGTTGCGACCCTTCACGAGCCCCCAGCGGGCGGGTGGGCGGCTGACTCCAACATCTACCTTCAGGGAGACCACAGGGGCAAGACGTTCATCATCGGGCGGCAGTACACGTTCATCTACGAGTTCTCGAAGTTCCTCATCAAGCAGACTGCGGACGATGGTACTACAGCCACCGAGGACATCGGGCGCTTGCAGCTTCGCCGTGCGTGGCTCAACTATGAACGCTCGGGTGCCTTCGAGATCTCCGTACACACGGGGGACCCGGAGAAGGCGTATGTGTACACCATGGCAGGTGGCCGACTTGGCTCTGAGGTGATCCTCGGTGAGCTGAACCTCGGCACTGGTCAGTACAAGTTCCCTGTGACAGGTAACGCCATGCGCCAGATCGTTACCATCGCCAGCGACACCCCGAACCCCCTCAACGTGATCGGGTGCGGCTACGAAGGCAACTACGTGCGCCGTTCCAGCGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0f86b122e43994ca0dbd767c4b375394ac8afc0937ac75972b1f6975a30a0771
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9077
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of Pseudomonas bacteriophages Johno,D., Masuda,Y., Honjoh,K.-I. and Miyamoto,T. 2022-11-12 — GenBank