Protein

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Genbank accession
ATN94212.1 [GenBank]
Protein name
nucleic acid binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRSSFAKSIYVGAAVLGLAGLSAVTTTTASAKSYATAGSYTALTKGQNVLVNGTNAIYSKPGTVKGAKVVASKKTVAKLAASKKSNDTFYAYGTKTTNRGSVYYKIVTMDKKYRGYIYGGKTAGTFAGGIKTTDTLTTAATPARTTGYYLKDVSKNTLWTAPKNTDINAKKVSLYGAAKTDPFTVDQAATKTKEGSLYYHVTDSKNSSISGWIYAGKGYDTTITDNTKQDLGGLALTASEAATNDNSVTVVYNGTGSKAVFISTAKDAKAGKLVNQAKNAQGQTLKEFVKSSVPTGYRVVGAYTEGAQYGNNVYVNVTAAATSKVALYVNQVDSGNVKVANPLKVNSSIASSDLSIKMDTSLLTGAKDSLISGNLTSISNSLNANGTIKGTKTYYTNAGKAYHYEFTFEPGPFNIDNRNASYGDTLKAGFGAKLVEGNATNNTTDNSWIA
Physico‐chemical
properties
protein length:450 AA
molecular weight: 47158,15090 Da
isoelectric point:9,65351
aromaticity:0,09333
hydropathy:-0,31444

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN94212.1
1 450
Domain Start End Length (AA) Confidence
N-terminal 1 30 30 0,9553
Central domain 31 439 410 0,8424
C-terminal 440 450 10 0,1181
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-30
Central
31-439
C-terminal
440-450

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lb
[NCBI] 		2048517 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus brevis ATCC 367
[NCBI] 		387344 Bacillota > Bacilli > Lactobacillales > Lactobacillaceae > Levilactobacillus > Levilactobacillus brevis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN94212.1 [NCBI]
Genbank nucleotide accession
MG020111 [NCBI]
CDS location
range 34987 -> 36339
strand -
CDS
ATGCGTTCATCATTCGCAAAGTCTATTTATGTAGGCGCTGCAGTGTTAGGTTTAGCTGGTCTTTCAGCTGTTACTACCACTACTGCAAGTGCTAAGAGCTATGCAACTGCAGGCTCATATACCGCCCTTACTAAGGGTCAAAATGTTTTGGTAAACGGTACTAATGCCATTTACTCAAAGCCAGGTACTGTTAAGGGTGCCAAAGTCGTTGCTTCTAAGAAGACAGTTGCTAAGTTAGCTGCTTCAAAGAAGTCCAACGACACTTTCTACGCATACGGTACTAAGACCACTAACCGTGGTTCCGTATACTACAAGATCGTTACCATGGACAAGAAGTACCGTGGTTACATCTACGGTGGTAAGACTGCCGGCACTTTTGCTGGTGGTATCAAGACCACTGATACCTTGACTACTGCTGCTACCCCAGCACGTACTACCGGTTACTACTTGAAGGATGTTTCAAAGAACACTCTTTGGACTGCTCCTAAGAATACCGATATCAATGCCAAGAAGGTTAGCCTTTACGGTGCTGCCAAGACTGATCCATTCACGGTTGATCAGGCCGCAACTAAGACTAAGGAAGGTTCCTTATACTATCACGTAACGGATAGCAAGAATTCTTCAATCTCTGGCTGGATCTACGCTGGCAAGGGTTACGACACTACTATCACTGATAACACTAAGCAAGACTTAGGTGGACTAGCATTAACTGCTAGTGAAGCTGCAACCAATGATAACAGTGTTACTGTTGTTTATAACGGTACTGGTAGTAAAGCTGTATTCATTTCTACTGCTAAGGACGCTAAAGCTGGTAAACTTGTAAATCAAGCTAAGAATGCTCAAGGTCAGACTTTAAAAGAATTTGTAAAGAGCAGTGTTCCTACTGGATATCGTGTAGTCGGTGCTTACACTGAGGGTGCACAATACGGCAATAACGTTTACGTTAATGTGACGGCAGCCGCTACTTCAAAGGTTGCTTTGTATGTAAACCAAGTGGACAGCGGTAATGTTAAAGTTGCCAATCCACTGAAAGTAAATTCATCAATTGCATCTTCTGATCTTTCCATTAAGATGGATACTAGTCTTTTGACTGGTGCCAAGGATAGTTTAATTTCTGGTAACTTAACTAGTATCAGTAATTCCCTTAATGCTAATGGTACAATTAAGGGAACTAAGACTTACTACACAAATGCAGGTAAGGCTTATCACTATGAATTTACGTTTGAACCAGGGCCATTTAATATTGATAACCGTAATGCGTCATATGGAGATACTTTAAAGGCTGGCTTTGGTGCTAAATTAGTTGAAGGTAATGCTACAAACAACACAACTGATAACAGCTGGATTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5c9569fbec19e3e64ab84773c63af2146713fca3d196733e1726b80118a61735
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8018
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and analysis of a bacteriophage of Lactobacillus brevis Yu,M., Qi,R., Jiang,X., Tang,T., Qiao,X., Jiang,Y., Tang,L., Wang,L., Xu,Y. and Li,Y. 2005-02 — GenBank