Protein

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Genbank accession
QQO87696.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPIEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDSAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYAFTNGETVNFGGKTLTIDCKAKFIGDGMLVWEQLGEGSVLNQPHMQTQTTPYTVYRFDDNGNWVTNPSTVLASVAQRMDKGYKPNINDLDIWDSLPENIKNQTAGATLRIMSGSNIIVNSPEATFGGYLFTLCNRILVKNPRNFIAWESGITFENHHTSAWGYGNWVVGGEIKYGSGSAVLFIRNDGGDDHDGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDVNADTGSPVERVDDYPLSQYPWFQLPTKHIIRNIITKDCMGIGAWWDGQNNIIDNIVTYEAHKEGIFDRGTNNDITNVTVIGANKDLTNLNQLTCEGGSRLRGVLIHAYTTEGYAVYAPQSEISSVACAGSGTKKILCTYIGDVQGGNINVQHNENQMTLAMRPAMGGTINPSLVMTADCQIALPGGEASIVKLSAIQDGIRVGELQLNRLGFKHMSIPVAPLQLPDSALEHNSSIGFFFGSDGVLRILAKKPDGAYVTYTLS
Physico‐chemical
properties
protein length:676 AA
molecular weight: 73123,02730 Da
isoelectric point:4,96911
aromaticity:0,09024
hydropathy:-0,22086

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–136
G3DSA:2.10.10.80 IPR012332
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
93–131
IPR040775 IPR011050
IPR015331
RBD
138–675
IPR015331
QQO87696.1
1 676
Architecture
ATT
STR
ATT 65-136 | STR 137-675 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO87696.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9936
Central domain 156 560 406 0,9900
C-terminal 561 676 115 0,8594
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-560
C-terminal
561-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_ER18
[NCBI] 		2801562 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO87696.1 [NCBI]
Genbank nucleotide accession
MW355459.1 [NCBI]
CDS location
range 11787 -> 13817
strand -
CDS
ATGTCTAGTGGTTGCGGTGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCTGGCGGCGCAGATATCGACTACGCCACTAACCAAGTAACCGGGCAGACGCAGAAGACCCTGCCTGCTGTTTTACGTGATGCTGGTTTCTCCCCGGCGTCTTTCAACTTCACAACCGGCGGGACCCTGGGAGCTGACGACGCGGATAAAGCGGTTCTTTGGCCTATTGAGGACGGCGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAGGTTATCCCTGCGGCGTCGACACCTCTTGCGACCGGCGGCATTTCGGATTCCGCCTGGGACGCGTTCGGAGATATTACCTTCCGTGCCGAAGCAGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTCGACAGCGTTCTTATCGACCGTGACTACGCCTTTACCAATGGGGAGACTGTTAACTTCGGCGGTAAGACCCTAACCATCGACTGTAAGGCTAAGTTTATTGGTGATGGTATGTTAGTCTGGGAACAACTCGGCGAAGGGTCTGTTTTGAACCAGCCGCATATGCAGACACAAACCACGCCGTACACAGTGTATAGATTCGACGACAACGGTAACTGGGTGACCAACCCGTCAACGGTGCTGGCGTCGGTAGCCCAAAGGATGGATAAGGGATATAAACCAAATATTAACGATTTGGATATATGGGACAGCTTACCCGAGAACATAAAAAATCAAACAGCCGGCGCAACACTCCGCATTATGAGCGGGTCAAACATAATCGTAAATTCTCCGGAGGCAACCTTCGGCGGCTATTTATTCACCCTATGTAATCGTATACTGGTTAAAAACCCACGAAATTTTATCGCATGGGAATCAGGTATTACTTTCGAGAACCACCATACTTCCGCATGGGGTTATGGTAACTGGGTTGTAGGAGGGGAGATAAAGTACGGTTCAGGGTCCGCCGTTTTGTTTATCCGCAACGACGGCGGTGATGACCATGATGGAGGGGTAAGAGACCTTATATCTTATCGTGTTGGGGAAAGCGGCGTAAAAACTTACCAGAACGAAATAGGTGGAAGGTCAGCCCGGAACTACCGTCTGGTATTTGATAATATTACGACCATACAGTGTTATTACGACGGGATAGATGTCAACGCGGATACCGGCTCCCCAGTTGAGCGCGTAGATGATTACCCACTCTCCCAATACCCGTGGTTTCAGTTGCCGACTAAACACATAATTCGCAATATAATCACGAAGGATTGCATGGGCATTGGGGCATGGTGGGATGGTCAGAATAATATCATAGATAATATTGTGACATATGAGGCCCACAAAGAGGGGATTTTTGACAGAGGTACTAACAACGACATCACTAACGTAACGGTTATAGGAGCGAACAAGGATTTAACTAACCTGAATCAGCTTACCTGCGAAGGTGGTAGCCGGTTGCGGGGTGTGTTGATTCATGCATATACCACAGAAGGATATGCCGTGTATGCCCCGCAATCCGAAATATCTTCGGTTGCGTGCGCCGGTTCAGGTACGAAAAAGATACTTTGTACCTATATTGGTGATGTACAGGGCGGCAACATTAATGTCCAGCATAACGAAAACCAGATGACCCTTGCTATGCGTCCTGCGATGGGCGGTACTATAAATCCATCGCTAGTAATGACCGCAGATTGCCAAATTGCCTTGCCTGGGGGTGAAGCTAGTATCGTTAAGCTTTCAGCGATACAGGATGGTATACGAGTAGGTGAGCTCCAACTTAACCGCTTAGGTTTTAAACATATGAGCATACCAGTAGCCCCCTTGCAATTACCGGATAGTGCATTGGAACATAACTCATCCATAGGCTTTTTCTTCGGAAGTGACGGGGTATTGCGAATCCTCGCCAAGAAACCAGACGGGGCCTACGTAACTTATACCTTATCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aeb796b5f2b1409c6ec5ad0a03cb5bba7fdded7a9ac2c2696e84f3951e440f65
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7191
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi Rodwell,E.V., Wenner,N., Pulford,C.V., Cai,Y., Bowers-Barnard,A., Beckett,A., Rigby,J., Picton,D., Blower,T.R., Feasey,N.A., Hinton,J.C.D. and Perez-Sepulveda,B. — — GenBank