Protein

View in Explore

Genbank accession

AHC30457.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect2

Probability 0,95

Protein sequence

MIIRKVLKGAKGGGKGGSKDNSPNSLRSGAYIKLIDLLGEGEIGGLVDGSRSIFFDNTPLMSGGSYNFKGVSWTQRVGLPDQPYVPGFNSVENEEAVGVQVKHGLPITRNVEGEDLDAVRVTVEIPALARQSDGRFKAHSVDFALEVRYDGGPWTNPFGTLTISGKCTSPYDRNYLINLPRNPSGASSPWSIRMVRLSDDSEDATKEQNDTVFASMTKITYGKFTYPNSAYIAMRVEAEQFGQSVPTRSYEVYGRIVQVPTNYTTRLYNADGVITRNASYSGSWNGTFKWAWTDNPAWVLYDIMTNDRFGLGEDIDASQVDKWSLYEIAQYADQNVPDGRGGNKPRFTFNGAMYDQQEAFDAIQQIASVFRGMAYWSSGSVMATQDRPKDVSILAASANAVDGSFSYQGSALTARHTVAVVKFDNPELNYEQDFVVVEDRDGIELYGYNETEILATGCTDRAQAYRIGEWALFTELNETNVVSYKAGLDHAGLRPGDIIAVQDRSFAGPDNAGRLKAGSSASTLLLDHDVTLETGQSYSVSVVLPNGTVEERDIVVSSYDVPINILDVSAPFSVTPDEEALWVLASDTLVPSLWSCISVRESEPHIYEVVGAQYEPAKFEHIDNSARFDPLPTQNNPVVQPPINLLVQESIYTQDGVPRTALLVSWTSPGIEFAVVGYEVAYDGPDGYVQVGRVPSTSVQILDAPPGDYTFYISSVSLSQRVSLPATIDYATLGWQGTHNGTIANVRLKGKTPDITSFTGSSPEFVWDNVWPTGTIFNPDGSSPIFRNNLVSIYDEVTEDLLRQEYTRNSNYVYTLSKNRADNAVYNRGPSRAFRVEVQVCDVYGRQSDPGTISVSNPPPPAVAPVGIPGFGQFVVRWSTLSDPDLAGFLVWVSSAPGFNPLTTEPYFDGMVNAITYAASSGTTYYVRVGAYDTFGKTGLNISGEIECTAVGSDDLDPPDTPTGLTSTTSLISDVQSRVIYTWDANTEPDMMGYTLEIKEEGGDWVGFNTSTAIYPINVLPSTALDARVRAYDVNGNYSAFTAVYSTVAAGDLVPPAVPTNWTAKGGFGIVFLEGDPNSERDFRAFEVYASEATDAPDGATVATHTSSANQVFITDLDDNLTLNFWVRAVDTSGNKSDWTAMFSATTVSSNVLLTTEALEGIVDRTSFATSIEVPGIGNALPDIPFDSSTPKQFFLATEGRMYVQKVDGTGWVLTTSTTILDGQIITGQIAAGAIGTDQLAANAVTAKNLSIRDFTVLADNADMQLGPVKGWANSSRIFNDPATAYPGQTWVAKLIASVTVTVANELEVPCKEGEKFYLSASVKASGAAGSGRKGVRAQFLDSAGTLLTPGTADTTSIPADWVSVSGFATAPAGAVRVRLEMIAYNNEGGTVYIANPRMMRAAAVLIEPNGITSDKITTGEFITLSAQIKDAIITDAKVANLSAAKLTAGTALAGSITVSGTALSTMQSQANDPATRINAQSTQIDPGKILISGATTLASWRDGTDTTLIAGGKLSANSVTANKLTIGARGINLENIQFSYDKTAGTVSWTAGTLRYMSTNATTGVVEQRGLVVSVQALPPGQPGVSTSTGRSPIPTRRSPRLSRSPPRTSSPRRTLPIPSSSPPTTVERSSTPTTARRSSTAQRSRPAPS

Physico‐chemical properties

protein length:	1651 AA
molecular weight:	177134,04470 Da
isoelectric point:	4,74375
aromaticity:	0,08904
hydropathy:	-0,20478

Domains

Domains [InterPro]

IPR053171
Unmapped
4–756

IPR053171 DC_1267 IPR036116 G3DSA:2.60.120.260

DC_0129
STR
16–783

DC_0129 DC_1241 IPR013783 IPR013783

IPR055385
ATT
91–221

IPR055385 IPR032876 DC_0960

IPR003961
STR
1055–1150

IPR003961

DC_1605
STR
1145–1407

DC_1605

AHC30457.1

1 1651

Architecture

STR

ATT

STR

ATT

STR

ATT

STR

STR 16-90 | ATT 91-221 | STR 222-355 | ATT 356-515 | STR 516-755 | ATT 756-953 | STR 957-1407 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	4	756	InterPro	Viral Tip Attachment Protein	-	-	-	-
DC_0129	STR	DC_0129	16	783	Novel HMM	DC_0129	Central	Low	Positional only	234 proteins / 234 hits
IPR055385	ATT	DC_0360	91	221	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	356	515	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
DC_1267	ATT	DC_1267	756	858	Novel HMM	DC_1267	N-terminal	Low	Positional only	38 proteins / 38 hits
DC_1241	ATT	DC_1241	851	953	Novel HMM	DC_1241	N-terminal	Low	Positional only	68 proteins / 68 hits
IPR036116	STR	IPR036116	957	1147	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	958	1051	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
DC_0960	STR	DC_0960	972	1156	Novel HMM	DC_0960	Central	Low	Positional only	21 proteins / 21 hits
IPR013783	STR	IPR013783	1055	1154	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	1055	1150	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
DC_1605	STR	DC_1605	1145	1407	Novel HMM	DC_1605	Central	Low	Positional only	12 proteins / 12 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1254	1404	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Rhizobium phage vB_RleS_L338C [NCBI]	1414737	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Rhizobium leguminosarum [NCBI]	384	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Genbank protein accession

AHC30457.1 [NCBI]

Genbank nucleotide accession

KF614509.1 [NCBI]

CDS location

range 30389 -> 35344
strand +

CDS

ATGATCATCCGTAAGGTTCTTAAAGGCGCGAAGGGCGGCGGCAAGGGCGGTTCGAAGGACAACTCCCCGAACTCCCTCCGCTCCGGCGCGTACATCAAGCTTATCGACTTGCTCGGAGAGGGCGAGATCGGCGGGCTTGTAGACGGTTCGCGCTCTATCTTCTTCGACAACACCCCGCTGATGTCGGGAGGCTCCTACAATTTCAAGGGCGTCTCCTGGACGCAGCGCGTGGGCTTGCCGGACCAGCCTTACGTCCCAGGCTTCAACTCTGTTGAGAACGAAGAGGCTGTCGGCGTCCAGGTCAAGCATGGCCTGCCGATCACCCGCAACGTCGAAGGCGAAGACCTTGATGCAGTCCGCGTGACCGTGGAAATCCCTGCCCTCGCAAGGCAGAGTGACGGGCGCTTCAAGGCGCACTCGGTCGATTTCGCGCTGGAAGTTAGGTACGACGGTGGGCCGTGGACCAACCCTTTCGGCACCTTGACCATCTCCGGCAAGTGCACGTCGCCGTATGACCGTAACTACCTGATCAACTTGCCGCGCAATCCCAGCGGCGCAAGCTCGCCATGGTCGATCCGCATGGTTCGCTTGAGCGATGACAGCGAAGACGCGACCAAAGAGCAGAACGATACCGTCTTCGCTTCGATGACGAAGATCACCTACGGTAAGTTCACCTATCCGAACTCCGCCTATATCGCCATGCGCGTCGAGGCAGAGCAGTTCGGCCAGTCGGTTCCGACCCGCTCATACGAAGTCTATGGACGTATCGTCCAGGTTCCGACGAACTACACGACACGCCTCTACAACGCCGATGGCGTCATCACCCGCAACGCCTCCTACTCGGGAAGCTGGAACGGCACGTTCAAGTGGGCCTGGACGGATAACCCGGCGTGGGTGCTCTACGACATCATGACCAATGATCGCTTCGGTCTTGGCGAGGATATCGACGCCTCGCAGGTGGACAAGTGGTCGCTCTACGAGATCGCGCAATACGCAGACCAGAACGTGCCCGATGGCCGTGGCGGCAACAAGCCGCGCTTCACGTTCAACGGCGCGATGTACGATCAGCAGGAGGCATTCGACGCCATCCAGCAAATCGCTTCCGTGTTCCGTGGCATGGCCTATTGGTCTTCCGGCTCGGTTATGGCGACACAGGATCGCCCGAAGGACGTGAGCATCCTTGCTGCATCTGCCAACGCGGTTGACGGCTCCTTTAGCTATCAGGGCTCGGCCCTCACTGCCCGGCATACGGTCGCCGTGGTCAAGTTCGATAACCCCGAACTGAACTATGAGCAGGATTTCGTAGTTGTCGAGGATCGCGACGGCATCGAACTCTACGGCTATAACGAGACCGAAATCCTTGCAACAGGTTGCACCGACCGGGCGCAGGCCTACCGCATCGGCGAATGGGCGCTGTTCACCGAACTGAATGAAACAAACGTCGTCAGCTACAAGGCTGGTCTCGATCATGCTGGCCTCCGCCCCGGCGACATCATCGCCGTCCAGGACAGGAGCTTTGCCGGTCCCGATAATGCCGGGCGTCTGAAGGCAGGCAGCAGCGCGTCCACCCTTCTGCTCGACCATGACGTGACCCTGGAGACCGGCCAGAGCTATTCAGTTTCGGTCGTGCTGCCGAACGGCACGGTCGAAGAGCGTGATATCGTCGTTTCTTCTTACGACGTTCCTATCAACATCCTTGATGTCTCAGCGCCCTTCAGCGTAACGCCTGACGAGGAAGCCCTTTGGGTTCTCGCGTCTGATACGCTCGTGCCCTCCTTGTGGAGTTGCATCTCTGTCCGTGAGAGCGAGCCGCATATCTATGAAGTGGTGGGAGCGCAGTACGAGCCCGCCAAGTTCGAACATATCGACAACTCCGCCCGCTTCGATCCTCTGCCGACGCAGAACAATCCTGTCGTGCAGCCGCCGATCAACCTGCTTGTGCAGGAAAGCATCTATACCCAGGACGGCGTTCCGCGCACGGCCTTGCTTGTATCGTGGACCTCGCCCGGCATCGAGTTTGCCGTGGTCGGTTACGAAGTCGCCTACGACGGCCCGGACGGCTATGTCCAGGTCGGCAGGGTTCCGTCCACGTCCGTGCAGATTTTGGATGCGCCGCCCGGCGATTACACCTTCTATATTTCGAGCGTGTCGCTTAGCCAGCGCGTCTCTCTGCCAGCCACCATCGACTACGCAACTCTCGGCTGGCAGGGTACGCACAATGGCACCATCGCCAACGTTCGCCTGAAGGGCAAGACGCCCGACATCACGTCGTTCACGGGCTCCTCCCCGGAGTTCGTCTGGGATAACGTGTGGCCCACGGGCACCATCTTCAATCCGGACGGCAGCAGCCCGATCTTCCGCAACAACCTCGTCAGCATCTATGACGAAGTCACCGAAGACCTTCTGCGCCAGGAGTACACCCGCAACTCGAACTACGTCTACACGCTGTCGAAGAACCGCGCCGACAACGCTGTCTACAATCGTGGTCCGAGCCGCGCGTTCCGCGTCGAAGTCCAGGTGTGCGACGTTTACGGACGCCAGTCCGATCCGGGCACCATCTCGGTAAGCAACCCGCCGCCTCCCGCCGTCGCCCCTGTAGGCATTCCGGGCTTTGGTCAGTTCGTCGTTCGCTGGTCTACTCTCAGCGATCCTGACCTTGCAGGCTTCTTGGTTTGGGTATCGAGCGCGCCGGGCTTCAACCCGCTGACCACGGAGCCCTACTTCGACGGCATGGTGAACGCCATCACCTATGCGGCGTCTTCCGGCACGACCTACTATGTCCGCGTTGGAGCCTACGACACCTTCGGCAAAACCGGCCTCAACATCTCTGGCGAGATCGAGTGCACGGCGGTCGGCTCCGATGACCTTGACCCGCCGGACACTCCGACCGGCCTGACCTCGACTACGTCGCTGATTTCGGACGTTCAATCCCGCGTCATCTATACCTGGGATGCGAACACCGAACCCGACATGATGGGCTACACGCTGGAGATCAAGGAAGAGGGCGGCGATTGGGTCGGCTTCAATACTTCAACGGCGATCTACCCGATCAACGTCCTGCCCTCCACCGCGCTCGATGCACGGGTAAGGGCCTACGACGTGAACGGCAACTACTCCGCCTTCACCGCTGTCTACTCGACGGTAGCGGCAGGCGACCTCGTACCTCCGGCGGTCCCGACCAACTGGACGGCCAAGGGTGGCTTCGGTATCGTGTTCCTGGAAGGTGACCCGAACAGCGAACGCGACTTCCGCGCCTTCGAAGTCTATGCGAGCGAAGCGACTGATGCGCCCGATGGTGCAACTGTTGCAACGCATACCTCCTCCGCCAATCAGGTGTTCATCACCGATCTTGACGATAACCTGACCCTGAATTTTTGGGTAAGGGCCGTGGACACGTCTGGCAACAAGTCGGACTGGACGGCGATGTTCTCCGCCACCACGGTCTCTTCCAACGTCCTCCTGACGACGGAAGCCCTGGAAGGCATCGTGGATCGCACCTCGTTCGCCACCTCCATCGAAGTGCCGGGCATCGGTAACGCGCTGCCTGACATCCCGTTCGATAGCTCGACGCCCAAGCAGTTCTTCCTTGCCACCGAAGGCAGGATGTACGTGCAGAAGGTGGACGGCACGGGATGGGTGCTGACCACTTCGACCACGATCCTTGACGGCCAGATCATCACAGGCCAGATCGCTGCCGGTGCCATCGGCACTGATCAGCTTGCCGCCAACGCGGTCACGGCCAAGAACCTGTCGATCCGAGACTTCACCGTCCTCGCCGATAACGCAGACATGCAGCTTGGACCGGTGAAGGGCTGGGCGAATTCGTCCCGCATCTTCAACGACCCGGCGACGGCCTACCCCGGTCAGACGTGGGTGGCTAAGCTCATCGCCTCGGTAACGGTCACGGTCGCCAACGAACTGGAAGTCCCTTGCAAGGAAGGCGAGAAGTTCTATCTCTCCGCCAGCGTCAAGGCTTCCGGCGCGGCTGGCAGTGGCCGCAAGGGTGTGCGCGCTCAGTTCCTGGATAGCGCTGGAACGCTGCTCACGCCCGGCACCGCCGATACCACCAGCATCCCCGCCGATTGGGTATCGGTCTCCGGCTTCGCCACGGCACCTGCTGGCGCTGTCCGCGTTCGCCTGGAAATGATCGCCTACAACAACGAAGGCGGCACGGTCTACATCGCCAATCCTCGGATGATGCGCGCCGCTGCCGTGCTTATCGAGCCGAACGGCATCACCTCCGACAAGATCACGACGGGCGAGTTCATCACGCTCTCCGCTCAGATCAAGGATGCGATCATCACCGACGCCAAGGTTGCCAACCTGTCGGCTGCAAAGTTGACGGCTGGCACCGCGCTTGCTGGAAGCATCACGGTTTCGGGCACGGCGCTTTCGACCATGCAGTCCCAGGCCAATGACCCGGCGACCCGCATCAATGCGCAGTCCACCCAGATCGACCCAGGCAAAATCCTGATCTCCGGCGCTACCACGCTGGCCTCTTGGCGCGACGGCACCGATACCACCTTGATCGCGGGCGGCAAGCTGTCGGCGAACAGCGTGACCGCCAACAAGCTCACTATCGGCGCTCGCGGCATCAACCTGGAGAACATCCAGTTCTCCTACGACAAGACGGCTGGCACTGTCTCGTGGACGGCGGGAACGCTGCGCTACATGAGCACGAATGCCACGACCGGCGTTGTCGAACAGCGTGGCCTCGTGGTCTCGGTGCAGGCACTGCCACCTGGACAACCGGGCGTCTCTACATCTACTGGCAGAAGCCCGATCCCGACCCGGCGCAGTCCACGGCTATCACGTTCTCCTCCACGAACGTCATCGCCACGGCGAACGCTTCCGATACCGTCGTCTTCGCCACCTACGACGGTGGAACGAAGTTCAACGCCAACTACGGCCAGACGATCATCGACGGCGCAACGATCCAGACCGGCACCATCGTAG

Genome Context

Tertiary structure

PDB ID

4f6d440109734f435b5908f99aba01dd4db6816166c47470bad1955f8679ab80

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7764

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequence of rhizobiophage vB_RleS-L338C	Restrepo-Cordoba,M., Halmillawewa,A.P., Hynes,M.F. and Yost,C.K.	2015-09-16	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature