Protein

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Genbank accession
YP_007673828.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSVPYSNTIAQVLDKHLRIRHSNSWQYVEDVRIRHNNTWEDVKEVYIRHSGSWQLVHEGEHFLFNHTLNGNSQSEFSLASWISGQGYSGNKIKGALTVNNLQQRVNLGSWSSDSRVYLRINNNDRISGKGGNGGQRGQNAASNGQNGQRALYTRVGFHLDNGGIIAGGGGGGAGGRNGQVTQQVTEQNNCMKGNKCQNTYNVTNNTNGGGGGGGAGYPGGTNGGNGAQNGQSNGGGSGGNSGAGTARDGGDGGDLGQNGDNAQNNQGGSPGSAGNAIDGWSYRLSGEGSGNGDRRGNSVN
Physico‐chemical
properties
protein length:300 AA
molecular weight: 31096,70330 Da
isoelectric point:9,11810
aromaticity:0,06333
hydropathy:-0,94000

Domains

Domains [InterPro]
DC_1762
ATT
14–193
DC_1762
IPR007932
RBD
66–297
IPR007932
YP_007673828.1
1 300
Architecture
ATT
RBD
ATT 14-193 | RBD 194-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-213
[NCBI] 		889956 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673828.1 [NCBI]
Genbank nucleotide accession
NC_020845.1 [NCBI]
CDS location
range 86012 -> 86914
strand -
CDS
ATGTCAGTTCCATATAGTAATACAATTGCACAAGTTCTTGATAAGCATTTGCGTATCAGACATAGTAACTCATGGCAATATGTTGAGGATGTAAGAATACGTCATAATAACACATGGGAGGATGTTAAAGAAGTATACATCCGTCATAGTGGATCATGGCAACTTGTTCATGAGGGTGAGCACTTCTTGTTTAACCATACATTAAATGGTAACTCACAAAGTGAATTTAGTTTAGCAAGTTGGATATCTGGTCAAGGTTACAGTGGTAACAAAATAAAAGGTGCATTGACAGTTAATAATTTACAACAACGAGTGAACTTAGGATCATGGTCTAGTGACTCTAGAGTATATCTTAGGATCAATAATAATGATAGAATATCTGGTAAAGGTGGTAATGGTGGTCAACGTGGTCAAAATGCAGCATCTAATGGTCAAAATGGACAACGTGCTTTATATACTAGAGTTGGTTTTCATTTAGATAATGGAGGAATCATCGCAGGAGGCGGTGGCGGTGGTGCAGGAGGTCGTAATGGACAGGTTACACAACAGGTAACAGAACAAAACAATTGCATGAAAGGAAATAAGTGCCAGAATACATATAATGTAACCAACAACACTAACGGTGGTGGCGGTGGCGGTGGAGCTGGTTATCCTGGCGGTACCAATGGTGGTAATGGAGCACAAAATGGACAGTCAAATGGTGGCGGTTCGGGTGGAAATAGTGGTGCAGGAACTGCTAGAGATGGTGGAGATGGTGGAGATCTTGGTCAAAACGGTGATAATGCCCAAAATAACCAAGGTGGATCACCAGGATCTGCAGGAAATGCCATTGATGGATGGAGTTACCGATTATCAGGAGAAGGTTCTGGTAATGGAGACCGCAGAGGCAACTCAGTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6231abc0b88a289b39bdb109c6816232dd9e185357dc61c309e837d903460985
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7689
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-213 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank