Protein

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Genbank accession
AGH16167.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MATHDYVLDNATGANFRADINLALAAIVSNNSSATEPSTKYAYQWWADTNDGVLKIRNSANDGWVTLLQLDGTLTLEDGSNSAPALGFRDDLNTGIFSSAADTLDVTCGGTTRGSFSASGLAVTGSVTATTFVGNVDAVDGDFDGTLEADAITVAGTALSTVIAGTTLTQAAQTNITSLGTLTGLTVGGDVTFDGATTGRDIVFDRSDNALEFADNAKAKFGSSAELEIYYDGTNPIFYAGTNTVRVVADNIHFEAGDFGDEFLRCNHDGAVELYYDNSKKFETTSSGINVTGQADVDSINCTGELDLTGHLDLNSDSSRIKLGAGDDFQLYHDGSNNYIFTNNGDIIVQTDGDDIQLLASDDVIIKVQGGLETAINCIGDGAVELYHNNSKKLETNSSGVNVIGSLTVDGSAISGGGGKILQVVQQTKTDTATHSVNINQGAANFSLIMSKSITPANSSNKILVQFSISGNVEANGAHVDFVLRKTVGSTVTHPILGDSASGYTSITTGFRSGGGNQHNVGQCIYQFLDDAGTTSAITYGVAVATEGATTYRVNASGGDLSSQSWSSRQASTIVLMEVSA
Physico‐chemical
properties
protein length:581 AA
molecular weight: 60352,10120 Da
isoelectric point:4,25357
aromaticity:0,07057
hydropathy:-0,10034

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH16167.1
1 581
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,9478
Central domain 12 210 200 0,0993
C-terminal 211 581 370 0,9268
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-210
C-terminal
211-581

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage MED4-117
[NCBI] 		889954 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH16167.1 [NCBI]
Genbank nucleotide accession
JF974321.1 [NCBI]
CDS location
range 27962 -> 29707
strand -
CDS
ATGGCAACGCATGATTACGTTTTAGATAATGCCACAGGTGCTAATTTTCGTGCAGATATAAATTTAGCCCTTGCAGCTATCGTAAGTAATAACTCATCAGCAACTGAACCAAGTACAAAATATGCTTATCAATGGTGGGCGGATACTAATGATGGTGTTTTAAAAATAAGAAATAGTGCAAATGATGGCTGGGTTACTTTATTACAACTTGATGGAACTTTAACCCTTGAAGATGGCTCAAACTCCGCACCCGCACTAGGATTTCGGGACGATTTAAATACTGGTATTTTTTCAAGTGCTGCTGACACTTTAGACGTTACTTGTGGAGGAACAACAAGAGGTAGTTTTAGTGCTTCTGGTTTGGCAGTTACAGGAAGTGTTACTGCTACAACCTTTGTTGGAAATGTAGATGCTGTCGATGGAGACTTTGATGGAACTCTAGAAGCTGATGCTATAACTGTTGCTGGAACAGCTTTATCAACTGTTATTGCAGGAACTACTCTTACACAAGCAGCACAAACAAATATTACTTCTCTAGGTACTCTTACAGGATTGACTGTTGGTGGGGATGTAACTTTTGATGGTGCTACTACTGGCAGAGATATTGTTTTTGACAGATCAGATAACGCATTAGAGTTTGCTGATAATGCTAAAGCTAAATTTGGTTCTTCTGCAGAGCTTGAAATTTATTATGATGGAACGAATCCTATCTTTTACGCTGGCACAAATACTGTAAGAGTAGTTGCTGACAATATACATTTTGAGGCTGGAGATTTTGGAGATGAATTTCTTAGATGTAATCATGATGGAGCAGTAGAGCTATATTACGACAACAGCAAAAAATTTGAGACAACCAGTTCTGGAATAAATGTTACTGGACAAGCTGATGTTGATAGTATTAATTGTACTGGTGAGTTAGATTTAACTGGACACCTTGATTTAAACTCTGACAGCTCCAGAATTAAACTCGGAGCTGGGGATGATTTTCAGCTATATCACGATGGTAGTAATAACTACATTTTTACTAACAATGGCGATATAATTGTGCAGACTGATGGTGATGACATTCAGTTATTAGCTAGTGATGACGTGATAATAAAAGTTCAAGGAGGTCTTGAAACTGCAATCAATTGTATTGGTGACGGTGCAGTAGAGCTATATCATAACAACAGTAAAAAATTAGAAACCAACAGTTCTGGCGTGAATGTTATTGGGAGCTTAACCGTTGATGGTTCAGCTATAAGTGGTGGTGGTGGAAAAATTTTACAAGTAGTTCAACAAACTAAAACTGACACTGCCACTCATTCTGTAAATATAAATCAAGGTGCAGCAAATTTTTCTTTAATTATGAGCAAATCAATTACACCCGCAAATTCATCAAACAAAATTCTTGTTCAATTCAGTATTTCAGGTAACGTAGAAGCTAACGGTGCGCACGTTGATTTTGTGTTAAGAAAAACAGTAGGAAGCACAGTCACACACCCAATTTTAGGAGACAGTGCAAGCGGATATACCTCAATTACAACTGGTTTCAGAAGTGGAGGAGGAAATCAACATAATGTCGGACAATGTATTTATCAGTTTTTAGATGATGCTGGAACAACATCTGCTATAACTTATGGTGTCGCAGTCGCTACAGAGGGGGCAACAACTTATAGGGTTAATGCAAGTGGTGGTGATTTAAGTAGCCAATCTTGGTCATCAAGACAGGCCAGTACTATAGTATTAATGGAGGTTTCAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e4fa7a12e998aecea38614d9606c91df886ac4185ba9f5ec8dddd35a8afdaa8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7680
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-117 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank