Protein

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Genbank accession
AWD90284.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAEVNVVKKALATMQDLSRGINTVDQVRGGSVYTLNNISLATVVDSEAKLAFLDPVQTHRAGVLRNGQLTEYVEVNGVWVKLIAANAEASYYNKLQSFALGNTLNSLTDVLWNDVDSQYYKWAGAFPKTVAAGSTPETSGGISPTTWVAMGSATLRSDLAKANGYTLVGGVASSADIATVQASLAIIVQKDDIYVDDYKASTETSYDNAVQEANAAAVAAKKPLRWLGGTYNMAAPVVIDMPSAAPAWLGNGISSTKITFPNAQAGEKQLIIQSASDWYDYVMQGMTISSAHAGTLLQIGRDNYNDPLNVARFQDLAVLNSFQGGNVTEAMRLNYLVNSNFIGVRANAYANGAGNNQGRALVVRQMSFSAFMSCSFGNASYGISFLDGFSFGNVWNALDCENVNIGIYNGSANAGRNTFIGGQYSLWQNYMVQAPVGSGTTNRIHIINGNFSQDTNQVDPANCVGVLIEGQPIGITTPGMPGSEVSLQNTTGRNVDIYFNGGTSFSGVAVEGVQLGARNYVNLKAGQHIQLTYAGAPTWLWLQAG
Physico‐chemical
properties
protein length:545 AA
molecular weight: 57942,14680 Da
isoelectric point:5,11536
aromaticity:0,09358
hydropathy:-0,04055

Domains

Domains [InterPro]
DC_0352
STR
3–541
DC_0352
G3DSA:2.10.10.80
ATT
91–162
G3DSA:2.10.10.80
IPR040775
RBD
92–151
IPR040775
AWD90284.1
1 545
Architecture
STR
ATT
STR
STR 3-90 | ATT 91-162 | STR 163-541 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWD90284.1
1 545
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,9887
Central domain 206 471 267 0,9728
C-terminal 472 545 73 0,9579
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-471
C-terminal
472-545

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Amaethon
[NCBI] 		2163629 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya dadantii
[NCBI] 		204038 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90284.1 [NCBI]
Genbank nucleotide accession
MH059635.1 [NCBI]
CDS location
range 25033 -> 26670
strand -
CDS
ATGGCTGAAGTAAATGTAGTGAAAAAAGCACTTGCAACTATGCAAGATTTGTCACGCGGTATCAACACTGTTGACCAAGTGCGAGGTGGCTCTGTTTATACTCTTAATAACATTAGTTTAGCTACTGTTGTAGATAGTGAGGCTAAATTAGCGTTTTTAGACCCTGTACAAACTCATCGTGCTGGCGTATTACGTAACGGTCAGCTTACAGAATATGTAGAAGTTAATGGAGTATGGGTTAAGCTAATTGCAGCCAATGCTGAAGCTAGTTATTATAACAAATTGCAGTCTTTTGCTTTAGGCAATACGCTTAATTCGTTGACTGACGTACTATGGAATGACGTAGATTCACAATATTATAAGTGGGCAGGAGCGTTCCCCAAAACAGTCGCAGCTGGTAGTACTCCTGAAACTTCTGGTGGCATTAGCCCTACTACTTGGGTCGCTATGGGTTCTGCTACTTTGCGGTCTGACTTAGCTAAAGCTAATGGATACACTTTAGTTGGAGGTGTAGCTTCTTCTGCTGATATTGCTACCGTACAAGCATCTTTAGCTATTATTGTACAAAAAGATGATATCTACGTAGATGACTATAAAGCCTCTACTGAAACGTCCTATGATAATGCAGTTCAAGAAGCTAATGCTGCAGCTGTTGCAGCTAAGAAACCTCTGCGGTGGCTTGGCGGCACTTATAATATGGCGGCACCAGTCGTTATTGATATGCCTTCAGCTGCTCCTGCATGGCTGGGTAACGGTATCAGCTCTACTAAAATTACTTTTCCGAATGCACAGGCAGGAGAAAAACAACTTATTATTCAGTCTGCATCAGACTGGTATGACTATGTTATGCAAGGCATGACTATTAGTTCAGCACATGCTGGTACATTATTGCAAATCGGTCGTGATAACTATAATGACCCATTGAATGTTGCACGTTTTCAAGATTTGGCCGTCCTGAATAGTTTTCAGGGCGGCAATGTCACGGAAGCAATGCGTCTTAACTATCTTGTAAATAGCAATTTTATTGGGGTGCGAGCTAATGCTTATGCTAATGGCGCAGGTAATAACCAGGGCCGTGCATTAGTTGTACGGCAAATGTCGTTTTCTGCTTTTATGTCTTGTTCATTTGGGAATGCGTCTTATGGAATATCTTTTCTTGATGGTTTCTCATTTGGTAATGTATGGAATGCGCTTGATTGTGAAAACGTTAATATTGGTATTTACAATGGTTCAGCTAATGCTGGTCGTAATACCTTTATTGGCGGTCAATACTCCTTGTGGCAGAATTACATGGTTCAAGCTCCTGTAGGTAGTGGAACAACCAATCGTATTCACATTATCAACGGTAATTTTTCTCAGGATACTAACCAAGTAGACCCGGCCAACTGCGTAGGTGTGCTTATCGAAGGTCAACCTATCGGCATTACTACTCCAGGTATGCCTGGTTCTGAAGTGTCTTTACAAAACACAACAGGTCGTAATGTTGATATTTACTTTAACGGCGGTACAAGTTTCAGTGGAGTAGCAGTTGAAGGCGTACAATTGGGTGCTAGAAATTATGTCAATCTTAAAGCAGGTCAGCATATTCAGTTGACTTATGCAGGTGCTCCTACTTGGTTGTGGCTTCAGGCCGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9d209920911100b130c0357df07c986ed44215e952ea611c9094e2e2a19f0904
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7864
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank