Protein

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Genbank accession
UYD72067.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTAIQVADLNNGKVDVDHVAAFANSTALTATDRTGRSKRTLAGIDALAVERLDVIDSNAQAVLASLGYQVPVPYTAGLLMTVPNQTVSYFDGVSISTYAPIESFLPFTTSGSFETAKFRLIQGVSGADLGASTGALLVGFAQAGAGAVKRTVQAKAREFGISPQDFWLATDPDWTNAFERWAIAGGNYIPDGTYVLKRQITISGSGSLRVGNVVLDFSQATNAASFPDAACFYAYAGALVALPNLDAVAMPVAFKGQGALAFVSAPAVQRGDVVVIYNPTNGSYNAARTVYRAGEFVEVESVTGNTARIFGSLWDAYLATAVQMYRLPRASFTITGGRLQVIGSKAAGFDSVACTKFENYPATRLDNLAADNSSYAACELKRCYNVTGVGVDLNQANAAAGSNDYGLVASNSQKVRMDGRWGGGRHAVTTGGGDYVGSVPCRDGLISGFFSNAETAGQGVGAVNNHGNTEGWRFQGVINGGYSGGGNNNGIMPGSILIAKKNQNGSAIYMGEMLGFNFAFAGISITAYGDGSLAGGRGVIDVGGNSSSAINANTKYGGTFDITNTRINAPDAIRAFTMINSGCVTTEPLNIAAAGLQVQQLSASPNVAIYVGPPSGGGKAVDVLDLRGAIVPSLTYGAGSPYSLTASGTAKVRGWSRSGSVTGPASTGANTLALAVVYDQRAPRQPKVSGISLNRGRTGTQSFNVHVTGETTAGFTINITTTDGTNFASALSFTASWSATVEE
Physico‐chemical
properties
protein length:743 AA
molecular weight: 76665,67980 Da
isoelectric point:6,91056
aromaticity:0,08883
hydropathy:0,04024

Domains

Domains [InterPro]
DC_1559
ATT
2–176
DC_1559 IPR049350 IPR054136
IPR049350
STR
237–325
IPR049350
UYD72067.1
1 743
Architecture
ATT
STR
ENZ
ATT 2-176 | STR 237-326 | ENZ 373-599 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD72067.1
1 743
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,9970
Central domain 175 632 459 0,9921
C-terminal 633 743 110 0,9831
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-632
C-terminal
633-743

Taxonomy

  Name Taxonomy ID Lineage
Phage Variovorax phage VarioGold
[NCBI] 		2981550 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Variovorax sp. ZS18.2.2
[NCBI] 		2971255 Pseudomonadota > Betaproteobacteria > Burkholderiales > Comamonadaceae > Variovorax >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD72067.1 [NCBI]
Genbank nucleotide accession
OP296522.1 [NCBI]
CDS location
range 16501 -> 18732
strand +
CDS
ATGACAGCCATTCAAGTCGCTGATCTCAACAACGGCAAGGTCGACGTTGACCACGTGGCGGCGTTTGCGAATTCCACCGCCCTTACTGCGACAGACCGAACGGGGCGCAGCAAGCGAACGCTGGCTGGCATTGATGCGCTGGCGGTTGAGCGTCTCGACGTGATCGACTCCAACGCGCAAGCGGTTCTGGCGAGCCTGGGCTATCAAGTTCCAGTCCCCTACACCGCGGGATTGCTCATGACCGTCCCCAACCAGACGGTGAGCTACTTCGATGGCGTCAGCATCTCTACTTACGCGCCTATCGAAAGCTTCCTGCCGTTCACGACCAGCGGTTCGTTCGAGACAGCGAAGTTTCGATTGATCCAAGGTGTGAGCGGTGCGGATCTCGGGGCGTCCACAGGAGCACTGCTCGTCGGGTTCGCCCAAGCCGGCGCCGGCGCAGTCAAACGAACCGTTCAGGCAAAGGCCCGCGAGTTCGGCATTTCTCCGCAGGACTTTTGGCTCGCGACAGATCCTGATTGGACCAATGCTTTCGAGCGCTGGGCCATCGCTGGCGGAAATTACATCCCCGACGGCACCTACGTGCTGAAGCGACAGATCACGATCAGCGGCAGTGGCAGTTTGCGCGTCGGCAACGTGGTGCTCGACTTCTCCCAGGCCACCAACGCGGCGTCGTTCCCTGACGCTGCTTGCTTCTATGCCTATGCGGGCGCATTGGTGGCTCTCCCGAACCTTGACGCGGTAGCGATGCCCGTCGCATTCAAGGGTCAAGGGGCGCTCGCGTTCGTCAGCGCACCGGCGGTTCAACGTGGCGACGTGGTGGTGATCTACAACCCGACGAATGGAAGTTACAACGCAGCGCGCACGGTCTACCGAGCAGGAGAGTTTGTCGAAGTGGAAAGTGTGACTGGAAACACTGCGCGAATTTTCGGCTCATTGTGGGACGCCTATCTCGCAACCGCGGTCCAGATGTATCGCCTACCTCGGGCGTCGTTCACGATCACAGGCGGTCGCCTGCAGGTGATCGGAAGTAAGGCAGCTGGCTTTGATTCCGTGGCCTGCACAAAGTTTGAGAACTATCCAGCCACGCGCCTCGACAACCTGGCTGCTGATAACAGTTCGTACGCAGCTTGTGAGCTCAAGCGTTGCTACAACGTCACTGGAGTGGGCGTCGATCTGAATCAAGCGAATGCCGCCGCAGGATCGAACGACTATGGACTGGTGGCCAGCAATTCGCAGAAGGTGCGAATGGATGGTCGTTGGGGAGGTGGTCGACATGCGGTGACGACCGGCGGCGGGGACTATGTCGGATCTGTGCCGTGTCGAGATGGTCTGATTTCCGGGTTCTTCTCGAATGCCGAAACCGCGGGGCAGGGGGTTGGTGCGGTGAACAACCACGGCAACACCGAGGGCTGGCGCTTCCAGGGCGTCATCAACGGCGGATATTCCGGAGGTGGAAATAACAACGGGATCATGCCCGGCTCGATTCTGATCGCGAAGAAAAATCAGAACGGCTCTGCGATCTACATGGGTGAGATGTTGGGCTTTAACTTCGCGTTCGCCGGCATCAGCATCACTGCCTATGGCGATGGCTCTCTCGCCGGCGGGCGCGGCGTGATTGACGTCGGTGGGAACAGCAGCTCGGCCATTAACGCGAACACGAAATACGGAGGCACCTTCGACATTACAAACACGCGCATCAATGCTCCCGACGCGATTCGCGCCTTCACGATGATCAACTCTGGTTGCGTGACAACTGAGCCTCTCAACATCGCTGCTGCTGGTCTTCAGGTGCAGCAACTGTCAGCGTCTCCCAATGTCGCGATCTACGTTGGTCCACCAAGTGGCGGCGGCAAGGCTGTAGATGTGCTCGACCTTCGCGGGGCCATCGTGCCGAGCCTCACCTATGGAGCCGGCTCGCCATACTCACTGACGGCCTCTGGTACTGCGAAGGTCCGAGGATGGTCGCGATCAGGGTCTGTTACCGGTCCCGCTTCCACCGGTGCAAACACTCTCGCCTTGGCTGTCGTCTATGACCAGCGGGCGCCCCGGCAACCGAAGGTCAGCGGCATTAGTCTGAACCGAGGACGCACCGGTACCCAGTCGTTCAACGTTCATGTGACCGGGGAGACCACGGCCGGCTTCACCATCAACATCACAACGACGGACGGTACAAACTTCGCAAGTGCGTTGTCTTTCACGGCGTCTTGGAGTGCGACTGTTGAAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4705a2c5068039b7d8b63bc591f950eb2eac3b7a26d231325922fc4f94f48738
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8187
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characteristics and comparative genomic analysis of a novel virus VarioGold, the first temperate bacteriophage induced from Variovorax sp. Decewicz,P., Kitowicz,M. and Radlinska,M. 2022-11-04 — GenBank