Protein

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Genbank accession
YP_010659494.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIPERSQREIVGPWVEQQNRLTRPLIDYERGGTDLYSSSKNLQEVLWTAEYVDGKVIVYRPGVDPITVLTEEGITQIALGFDQLMRPHIAYMAAGGVCKFYWFDTQLNAMTTMIIPGATTPRLAMDEKRDEFQNSSDLILSYKKDMDLCIRVQRHRYQNEILLDRLIEGDLISVGMNNKNRLQWFCVGHRWTPPIGDSKPVTFVGANDWIGTSESQKDMPNIPGLKSRDLLLAYIVHRSSVPVPSGWFVVAETETYGAPATNQKLLVLGKVATIADESVASFRFNQTNTSRFLICLSAFRSEYGPVIKDVVINPLSSTPSDARTINLPPHTNAAKDSMLICVGSHSAVSTGLVDNTPANMVRMDTVNITSDKRLYAGYVPLPSVGQTTASSFIQPASADYPYGISFVVNGTVS
Physico‐chemical
properties
protein length:413 AA
molecular weight: 45793,69160 Da
isoelectric point:5,92316
aromaticity:0,08475
hydropathy:-0,15424

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010659494.1
1 413
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,6278
Central domain 68 266 200 0,0790
C-terminal 267 413 146 0,9884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-266
C-terminal
267-413

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Piffle
[NCBI] 		2859656 Uroviricota > Caudoviricetes > Schitoviridae > Pokkenvirus piffle >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010659494.1 [NCBI]
Genbank nucleotide accession
NC_070868.1 [NCBI]
CDS location
range 66002 -> 67243
strand -
CDS
ATGATTCCTGAACGCTCTCAACGTGAGATTGTTGGCCCTTGGGTTGAGCAGCAGAATCGTCTGACCCGCCCGCTCATTGACTATGAGCGTGGCGGGACGGATCTGTACTCATCCTCCAAGAATCTTCAGGAAGTCTTGTGGACTGCCGAGTATGTGGATGGCAAGGTCATTGTCTACCGACCCGGCGTAGATCCAATCACGGTGCTCACTGAAGAAGGGATCACTCAAATCGCTCTGGGTTTTGACCAGCTGATGCGACCGCACATTGCATATATGGCTGCTGGCGGTGTGTGCAAGTTCTACTGGTTCGACACTCAGTTGAATGCCATGACGACCATGATTATTCCGGGAGCTACTACTCCACGACTGGCCATGGACGAAAAGCGAGATGAGTTCCAGAACTCAAGTGATCTGATCCTGTCCTACAAAAAGGACATGGATCTGTGCATTCGTGTGCAGCGTCATCGATACCAGAATGAAATTCTTCTTGATCGTCTGATCGAGGGCGATCTCATCTCAGTGGGGATGAACAACAAGAACCGCTTGCAGTGGTTCTGTGTTGGTCATCGTTGGACTCCACCGATTGGTGACTCGAAGCCCGTGACTTTCGTTGGGGCCAATGACTGGATCGGCACCTCGGAAAGCCAGAAGGATATGCCCAACATTCCCGGTCTGAAGTCTCGGGATCTGTTGCTGGCATATATTGTTCATCGAAGCAGCGTTCCAGTTCCTTCTGGCTGGTTTGTTGTTGCGGAGACGGAGACCTATGGTGCGCCTGCCACCAATCAAAAGTTGCTGGTGCTAGGCAAGGTGGCAACCATTGCTGATGAATCTGTTGCTTCGTTCCGATTCAATCAGACGAACACCAGTCGATTCCTGATCTGCCTCTCCGCTTTCCGAAGTGAGTATGGTCCGGTCATCAAGGATGTGGTGATCAATCCACTCTCATCTACCCCAAGCGATGCACGCACGATCAACCTGCCCCCGCACACGAATGCAGCAAAGGATTCAATGCTGATCTGTGTGGGGTCTCACTCTGCTGTCAGTACAGGTCTGGTGGACAATACCCCTGCCAACATGGTTCGAATGGATACGGTGAACATCACTTCGGACAAGCGACTGTATGCAGGATATGTGCCACTTCCGTCTGTTGGTCAGACCACAGCTTCCAGCTTCATCCAACCTGCCTCGGCTGACTACCCTTACGGCATTTCCTTCGTCGTGAACGGTACAGTCAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
62c316794905c82973c3f230752e717374a48c52c6aec5eb948dbd4325808553
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7274
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Stenotrophomonas maltophilia phage Piffle Kirchhoff,M., Ortega,C., Clark,J., Liu,M. and Burrowes,B. 2022-04-21 — GenBank